- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
CA.3: 3 residues within 4Å:- Chain A: D.25, D.100, E.102
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.25, A:D.100, A:D.100, A:E.102, H2O.3
CA.4: 6 residues within 4Å:- Chain A: D.76, G.77, S.79, L.81, D.99, E.102
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.76, A:G.77, A:L.81, A:D.99, A:E.102
CA.5: 5 residues within 4Å:- Chain A: D.59, N.91, Y.92, G.93, D.95
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.59, A:N.91, A:G.93, A:D.95, H2O.2, H2O.5
CA.6: 4 residues within 4Å:- Chain A: D.188, D.232, S.280, D.329
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.188, A:D.232, A:D.329, H2O.1, H2O.8
CA.7: 6 residues within 4Å:- Chain A: I.190, A.234, A.282, V.331
- Ligands: CL.8, CL.10
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:I.190, A:A.234, A:A.282, A:V.331
CA.9: 3 residues within 4Å:- Chain A: S.43, T.46, G.166
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:S.43, A:T.46, H2O.5
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.11: 3 residues within 4Å:- Chain A: V.3, F.4, R.6
No protein-ligand interaction detected (PLIP)PEG.13: 7 residues within 4Å:- Chain A: N.21, Y.22, T.23, P.24, F.64, I.66, D.100
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.22
PEG.14: 3 residues within 4Å:- Chain A: N.21, Y.22, H.28
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.22, A:Y.22
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 5 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
PGO.15: 6 residues within 4Å:- Chain A: E.318, F.321, P.322, G.323, I.324, G.325
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.318, A:G.323, A:I.324, A:G.325, A:G.325
PGO.17: 7 residues within 4Å:- Chain A: K.37, N.112, F.114, Y.143, G.145, K.146, S.147
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.114
- Hydrogen bonds: A:K.37, A:N.112, A:Y.143, A:K.146, A:F.149
PGO.18: 2 residues within 4Å:- Chain A: H.129, P.139
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.129
PGO.19: 2 residues within 4Å:- Chain A: N.342, I.345
No protein-ligand interaction detected (PLIP)PGO.20: 1 residues within 4Å:- Chain A: Q.211
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.211
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stura, E.A. et al., Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain. Faseb J. (2013)
- Release Date
- 2013-08-21
- Peptides
- Collagenase 3: A
Collagenase 3, pro-domain peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 5 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stura, E.A. et al., Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain. Faseb J. (2013)
- Release Date
- 2013-08-21
- Peptides
- Collagenase 3: A
Collagenase 3, pro-domain peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
X