SMTL ID : 4g77.1

Crystal Structure of C-lobe of Bovine lactoferrin Complexed with tolfenamic acid at 1.98 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: G.131, L.132, N.135, E.323, T.326, A.327, N.330 Ligands: TLF.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.330 NAG-NAG.2: 6 residues within 4Å: Chain A: L.93, N.204, D.205, W.208, E.214, Q.244 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.214

1 x FE: FE (III) ION(Non-covalent)

FE.3: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.4: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.122

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: K.100, R.229, R.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.100, A:R.237 Salt bridges: A:R.229, A:R.237

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 2 residues within 4Å: Chain A: G.312, E.318 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.318, A:E.318 ZN.7: 2 residues within 4Å: Chain A: H.247 Ligands: TLF.9 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.247

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 6 residues within 4Å: Chain A: Y.1, S.24, N.27, H.272, Q.273, L.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.27, A:Q.273 Water bridges: A:H.272

1 x TLF: 2-[(3-chloro-2-methylphenyl)amino]benzoic acid(Non-covalent)

TLF.9: 11 residues within 4Å: Chain A: I.128, L.132, H.247, L.248, A.249, V.250, E.323, Y.324, A.327 Ligands: NAG-NAG.1, ZN.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.249, A:V.250, A:V.250, A:Y.324, A:A.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shukla, P.K. et al., Crystal Structure of C-lobe of Bovine lactoferrin Complexed with tolfenamic acid at 1.98 A Resolution. To be Published

Release Date

2012-08-29

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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