SMTL ID : 4g93.4 (3 other biounits)

CRYSTAL STRUCTURE OF THE HUMAN HEPATITIS B VIRUS T = 4 CAPSID, ADYW STRAIN, in COMPLEX WITH THE PHENYLPROPENAMIDE ASSEMBLY ACCELERATOR AT-130

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

homo-tetramer

Ligands

2 x 0YP: N-[(1E)-1-bromo-1-(2-methoxyphenyl)-3-oxo-3-(piperidin-1-yl)prop-1-en-2-yl]-4-nitrobenzamide(Non-covalent)

0YP.1: 15 residues within 4Å: Chain B: P.25, D.29, L.30, T.33, W.102, S.106, F.110, V.115, Y.118 Chain C: V.124, R.127, T.128, Y.132, R.133, P.134 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:P.25, B:V.115, C:R.127, C:T.128 Hydrogen bonds: B:S.106 0YP.2: 7 residues within 4Å: Chain C: P.25, D.29, L.30, T.33, W.102, S.106, Y.118 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:P.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katen, S.P. et al., Assembly-directed antivirals differentially bind quasiequivalent pockets to modify hepatitis B virus capsid tertiary and quaternary structure. Structure (2013)

Release Date

2013-07-24

Peptides

Capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein

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