SMTL ID : 6bvn.1 (3 other biounits)

Cryo-EM Structure of Hepatitis B virus T=3 capsid in complex with the fluorescent allosteric modulator HAP-TAMRA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

1 x E9D: Heteroaryldihydropyrimidine tetramethylrodamine(Non-covalent)

E9D.1: 22 residues within 4Å: Chain A: V.124, W.125, R.127, T.128, Y.132, P.134 Chain B: F.23, F.24, P.25, D.29, L.30, T.33, W.102, I.105, S.106, T.109, F.110, Y.118, N.136, I.139, L.140, S.141 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.23, B:F.23, B:P.25, B:L.30, B:T.33, B:I.139, A:Y.132 Halogen bonds: B:D.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schlicksup, C.J. et al., Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids. Elife (2018)

Release Date

2018-02-07

Peptides

Capsid protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

Capsid protein

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