SMTL ID : 6wfs.1 (3 other biounits)

Cryo-EM Structure of Hepatitis B virus T=4 capsid in complex with the antiviral molecule DBT1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x U0A: 11-oxo-N-[2-(4-sulfamoylphenyl)ethyl]-10,11-dihydrodibenzo[b,f][1,4]thiazepine-8-carboxamide(Non-covalent)

U0A.1: 8 residues within 4Å: Chain A: F.23, P.25, L.30, T.33, W.102, I.105, S.106, T.109 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.33, A:T.109 Hydrogen bonds: A:T.33 pi-Stacking: A:W.102 U0A.2: 13 residues within 4Å: Chain B: F.23, P.25, T.33, W.102, I.105, S.106, L.140 Chain C: S.121, V.124, R.127, T.128, Y.132, P.138 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:V.124, C:V.124, C:R.127, C:T.128, C:P.138, B:T.33, B:I.105, B:L.140, B:L.140 U0A.3: 8 residues within 4Å: Chain C: F.23, P.25, T.33, W.102, I.105, S.106, T.109, I.139 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:T.33, C:I.105, C:T.109, C:I.139 Hydrogen bonds: C:T.33 U0A.4: 7 residues within 4Å: Chain D: F.23, P.25, L.30, T.33, W.102, S.106, I.139 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.23, D:T.33, D:I.139 Hydrogen bonds: D:T.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schlicksup, C.J. et al., Local Stabilization of Subunit-Subunit Contacts Causes Global Destabilization of Hepatitis B Virus Capsids. Acs Chem.Biol. (2020)

Release Date

2020-06-03

Peptides

Capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein

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