SMTL ID : 4gls.1

Crystal Structure of Chemically Synthesized Heterochiral {D-Protein Antagonist plus VEGF-A} Protein Complex in space group P21

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: F.29, E.35, I.36, E.37, Y.38, I.39, P.78 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain E: G.52 Chain F: L.25, D.27 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:L.25, E:G.52 Water bridges: F:D.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mandal, K. et al., Chemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus vascular endothelial growth factor} protein complex by racemic crystallography. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-05

Peptides

D- Vascular endothelial growth factor-A: AB
L- RFX001: CH
D- RFX001: DG
Vascular endothelial growth factor A: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

H
G

D
D

G
H

E
E

F
F

D- Vascular endothelial growth factor-A

L- RFX001

D- RFX001

Vascular endothelial growth factor A

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