SMTL ID : 4glu.3 (3 other biounits)

Crystal structure of the mirror image form of VEGF-A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: P.46, I.69, M.71, Q.91 Chain B: R.16 No protein-ligand interaction detected (PLIP) ACT.2: 2 residues within 4Å: Chain A: L.25 Chain B: G.52 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.52, B:G.52 ACT.6: 6 residues within 4Å: Chain A: S.43 Chain B: C.53, C.54, N.55, D.56, E.57 No protein-ligand interaction detected (PLIP)

2 x TFA: trifluoroacetic acid(Non-covalent)

TFA.3: 5 residues within 4Å: Chain A: G.52 Chain B: L.25, V.26, D.27, C.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.52 Halogen bonds: A:G.52 TFA.5: 2 residues within 4Å: Chain B: Q.82, I.84 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain B: E.23, P.46, L.47, I.69, M.71, Q.91 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mandal, K. et al., Chemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus vascular endothelial growth factor} protein complex by racemic crystallography. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-05

Peptides

D- Vascular endothelial growth factor-A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

D- Vascular endothelial growth factor-A

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