- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 7 x TFA: trifluoroacetic acid(Non-covalent)
TFA.2: 3 residues within 4Å:- Chain A: E.66, N.68, L.90
No protein-ligand interaction detected (PLIP)TFA.6: 5 residues within 4Å:- Chain A: E.23, P.46, L.47, I.69
- Chain B: R.16
No protein-ligand interaction detected (PLIP)TFA.7: 3 residues within 4Å:- Chain A: L.25
- Chain B: G.51, G.52
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.52
- Water bridges: B:G.52
- Halogen bonds: B:G.52
TFA.8: 4 residues within 4Å:- Chain B: P.63, T.64, E.65, E.66
No protein-ligand interaction detected (PLIP)TFA.15: 2 residues within 4Å:- Chain D: M.11, D.12
No protein-ligand interaction detected (PLIP)TFA.18: 5 residues within 4Å:- Chain E: G.52
- Chain F: L.25, V.26, D.27, C.44
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:G.52
- Halogen bonds: E:G.52
TFA.20: 2 residues within 4Å:- Chain F: Q.82, I.84
No protein-ligand interaction detected (PLIP)- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 7 residues within 4Å:- Chain B: E.23, P.46, L.47, M.48, I.69, M.71, Q.91
No protein-ligand interaction detected (PLIP)GOL.12: 7 residues within 4Å:- Chain C: E.23, P.46, L.47, M.48, I.69, M.71
- Chain D: R.16
No protein-ligand interaction detected (PLIP)GOL.14: 2 residues within 4Å:- Chain D: D.12, R.16
No protein-ligand interaction detected (PLIP)GOL.19: 6 residues within 4Å:- Chain F: E.23, P.46, L.47, I.69, M.71, Q.91
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mandal, K. et al., Chemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus vascular endothelial growth factor} protein complex by racemic crystallography. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-09-05
- Peptides
- D- Vascular endothelial growth factor-A: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
CE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 7 x TFA: trifluoroacetic acid(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mandal, K. et al., Chemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus vascular endothelial growth factor} protein complex by racemic crystallography. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-09-05
- Peptides
- D- Vascular endothelial growth factor-A: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
CE
EF
F