SMTL ID : 4gn8.2 (1 other biounit)

mouse SMP30/GNL-1,5-AG complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.18, N.103, N.154, D.204 Ligands: ASO.14 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.18, A:D.204, H2O.7

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.41, W.82, E.83 Ligands: ASO.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.83 Salt bridges: A:R.41 SO4.3: 3 residues within 4Å: Chain A: G.67, G.68 Ligands: ASO.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.68 SO4.4: 1 residues within 4Å: Chain A: R.15 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.15 SO4.5: 4 residues within 4Å: Chain A: R.112, F.138, P.139, Q.183 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.112 SO4.6: 4 residues within 4Å: Chain A: S.159, L.160, D.161, G.212 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.160, A:D.161, A:D.161 Water bridges: A:S.159, A:G.212 SO4.7: 2 residues within 4Å: Chain A: K.144, Q.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.186 Water bridges: A:K.144 Salt bridges: A:K.144 SO4.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.9: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.236, A:T.237 SO4.10: 2 residues within 4Å: Chain A: R.223, K.239 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.197, A:R.223, A:R.223 Salt bridges: A:R.223, A:K.239 SO4.11: 3 residues within 4Å: Chain A: R.234, Q.236, T.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.237 Water bridges: A:T.237, A:T.237 Salt bridges: A:R.234 SO4.12: 4 residues within 4Å: Chain A: P.124, N.220, K.244, G.266 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.220 Water bridges: A:P.124, A:P.124, A:N.220 Salt bridges: A:K.244

5 x ASO: 1,5-anhydro-D-glucitol(Non-covalent)

ASO.13: 8 residues within 4Å: Chain A: G.67, G.68, L.80, N.81, W.82, E.83 Ligands: SO4.2, SO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.82, A:E.83 Water bridges: A:R.64, A:G.67, A:G.68 ASO.14: 10 residues within 4Å: Chain A: E.18, I.34, R.101, N.103, E.121, P.124, N.154, D.204, Y.219 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.101, A:R.101, A:N.103, A:N.103, A:N.154 ASO.15: 3 residues within 4Å: Chain A: A.125, R.129, L.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.125, A:R.129 ASO.16: 6 residues within 4Å: Chain A: I.164, Y.166, A.177, R.191, P.229 Ligands: ASO.17 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.166, A:R.191, A:R.191 Water bridges: A:S.159, A:S.159, A:Y.166 ASO.17: 6 residues within 4Å: Chain A: V.193, P.229, E.230, T.231, G.232 Ligands: ASO.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aizawa, S. et al., Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase. Plos One (2013)

Release Date

2013-04-10

Peptides

Regucalcin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Regucalcin

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