SMTL ID : 4gn9.1 (1 other biounit)

mouse SMP30/GNL-glucose complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.18, N.103, N.154, D.204 Ligands: BGC.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.18, A:D.204, H2O.6, H2O.7

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.15 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.15 SO4.3: 3 residues within 4Å: Chain A: R.234, Q.236, T.237 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.237, A:T.237 Salt bridges: A:R.234

3 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.4: 13 residues within 4Å: Chain A: E.18, I.34, R.101, N.103, M.118, E.121, I.152, N.154, S.170, I.202, D.204, Y.219 Ligands: CA.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.101, A:R.101, A:N.103, A:E.121, A:A.125, A:N.154, A:S.170 Water bridges: A:R.101, A:E.121 BGC.5: 8 residues within 4Å: Chain A: E.23, R.41, G.67, G.68, Y.69, N.81, W.82, E.83 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.41, A:R.41, A:G.68, A:Y.69, A:W.82, A:E.83 Water bridges: A:E.23, A:E.23, A:E.23, A:N.81 BGC.6: 6 residues within 4Å: Chain A: V.93, D.94, E.95, D.96, Y.135, K.145 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.94, A:D.94, A:E.95, A:E.95, A:Y.135 Water bridges: A:D.96, A:Y.135 Salt bridges: A:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aizawa, S. et al., Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase. Plos One (2013)

Release Date

2013-04-10

Peptides

Regucalcin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Regucalcin

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