SMTL ID : 4gov.2 (2 other biounits)

The crystal structure of human fascin 1 S39D mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

4 x BR: BROMIDE ION(Non-covalent)

BR.1: 5 residues within 4Å: Chain A: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: G.86, P.87, R.90 Ligand excluded by PLIP BR.3: 3 residues within 4Å: Chain A: R.82, E.83, V.84 Ligand excluded by PLIP BR.4: 4 residues within 4Å: Chain A: A.58, R.217, S.218, K.250 Ligand excluded by PLIP

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: F.418, D.420 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: S.127, P.128, K.131 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.167, D.168, V.169 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: E.417, F.418 Ligands: GOL.14 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: Q.182, R.185 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: Y.230, G.243, K.244 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.110, Q.124 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: N.18, G.20, T.115, E.116 Ligand excluded by PLIP

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 9 residues within 4Å: Chain A: W.340, D.342, I.345, M.378, G.421, Y.423, F.452, F.453, F.455 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.342, A:F.453 GOL.14: 10 residues within 4Å: Chain A: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418, Y.423 Ligands: CL.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.381, A:R.383 Water bridges: A:P.384, A:L.416 GOL.15: 6 residues within 4Å: Chain A: Q.415, K.426, D.427, S.428, T.429, G.430 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.415, A:Q.415, A:S.428 GOL.16: 1 residues within 4Å: Chain A: N.21 No protein-ligand interaction detected (PLIP) GOL.17: 6 residues within 4Å: Chain A: E.8, A.9, V.10, Q.11, Q.258, E.492 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.9, A:Q.11, A:N.459 Water bridges: A:R.389 GOL.18: 5 residues within 4Å: Chain A: C.397, R.398, K.399, V.400, R.408 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.399, A:V.400, A:R.408, A:R.408 GOL.19: 3 residues within 4Å: Chain A: R.343, R.344, D.420 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.344, A:D.420

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Molecular mechanism of fascin function in filopodial formation. J.Biol.Chem. (2013)

Release Date

2012-11-28

Peptides

Fascin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fascin

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