SMTL ID : 4gov.3 (2 other biounits)

The crystal structure of human fascin 1 S39D mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

12 x BR: BROMIDE ION(Non-covalent)

BR.1: 5 residues within 4Å: Chain A: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: G.86, P.87, R.90 Ligand excluded by PLIP BR.3: 3 residues within 4Å: Chain A: R.82, E.83, V.84 Ligand excluded by PLIP BR.4: 4 residues within 4Å: Chain A: A.58, R.217, S.218, K.250 Ligand excluded by PLIP BR.20: 5 residues within 4Å: Chain B: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.21: 3 residues within 4Å: Chain B: G.86, P.87, R.90 Ligand excluded by PLIP BR.22: 3 residues within 4Å: Chain B: R.82, E.83, V.84 Ligand excluded by PLIP BR.23: 4 residues within 4Å: Chain B: A.58, R.217, S.218, K.250 Ligand excluded by PLIP BR.39: 2 residues within 4Å: Chain C: T.125, V.126 Ligand excluded by PLIP BR.40: 5 residues within 4Å: Chain C: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.50: 2 residues within 4Å: Chain D: T.125, V.126 Ligand excluded by PLIP BR.51: 5 residues within 4Å: Chain D: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP

26 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: F.418, D.420 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: S.127, P.128, K.131 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.167, D.168, V.169 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: E.417, F.418 Ligands: GOL.14 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: Q.182, R.185 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: Y.230, G.243, K.244 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.110, Q.124 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: N.18, G.20, T.115, E.116 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain B: F.418, D.420 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain B: S.127, P.128, K.131 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain B: R.167, D.168, V.169 Ligand excluded by PLIP CL.27: 3 residues within 4Å: Chain B: E.417, F.418 Ligands: GOL.33 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain B: Q.182, R.185 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain B: Y.230, G.243, K.244 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain B: R.110, Q.124 Ligand excluded by PLIP CL.31: 4 residues within 4Å: Chain B: N.18, G.20, T.115, E.116 Ligand excluded by PLIP CL.41: 5 residues within 4Å: Chain B: A.28, F.29 Chain C: T.115, E.116, R.118 Ligand excluded by PLIP CL.42: 3 residues within 4Å: Chain C: R.82, E.83, V.84 Ligand excluded by PLIP CL.43: 3 residues within 4Å: Chain B: F.29, G.30, K.32 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain C: R.167, D.168, V.169 Ligand excluded by PLIP CL.45: 3 residues within 4Å: Chain C: P.51, P.52, R.90 Ligand excluded by PLIP CL.52: 5 residues within 4Å: Chain A: A.28, F.29 Chain D: T.115, E.116, R.118 Ligand excluded by PLIP CL.53: 3 residues within 4Å: Chain D: R.82, E.83, V.84 Ligand excluded by PLIP CL.54: 3 residues within 4Å: Chain A: F.29, G.30, K.32 Ligand excluded by PLIP CL.55: 3 residues within 4Å: Chain D: R.167, D.168, V.169 Ligand excluded by PLIP CL.56: 3 residues within 4Å: Chain D: P.51, P.52, R.90 Ligand excluded by PLIP

20 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 9 residues within 4Å: Chain A: W.340, D.342, I.345, M.378, G.421, Y.423, F.452, F.453, F.455 Ligand excluded by PLIP GOL.14: 10 residues within 4Å: Chain A: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418, Y.423 Ligands: CL.8 Ligand excluded by PLIP GOL.15: 6 residues within 4Å: Chain A: Q.415, K.426, D.427, S.428, T.429, G.430 Ligand excluded by PLIP GOL.16: 1 residues within 4Å: Chain A: N.21 Ligand excluded by PLIP GOL.17: 6 residues within 4Å: Chain A: E.8, A.9, V.10, Q.11, Q.258, E.492 Ligand excluded by PLIP GOL.18: 5 residues within 4Å: Chain A: C.397, R.398, K.399, V.400, R.408 Ligand excluded by PLIP GOL.19: 3 residues within 4Å: Chain A: R.343, R.344, D.420 Ligand excluded by PLIP GOL.32: 9 residues within 4Å: Chain B: W.340, D.342, I.345, M.378, G.421, Y.423, F.452, F.453, F.455 Ligand excluded by PLIP GOL.33: 10 residues within 4Å: Chain B: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418, Y.423 Ligands: CL.27 Ligand excluded by PLIP GOL.34: 6 residues within 4Å: Chain B: Q.415, K.426, D.427, S.428, T.429, G.430 Ligand excluded by PLIP GOL.35: 1 residues within 4Å: Chain B: N.21 Ligand excluded by PLIP GOL.36: 6 residues within 4Å: Chain B: E.8, A.9, V.10, Q.11, Q.258, E.492 Ligand excluded by PLIP GOL.37: 5 residues within 4Å: Chain B: C.397, R.398, K.399, V.400, R.408 Ligand excluded by PLIP GOL.38: 3 residues within 4Å: Chain B: R.343, R.344, D.420 Ligand excluded by PLIP GOL.46: 11 residues within 4Å: Chain C: W.340, D.342, R.344, I.345, M.378, G.421, A.422, Y.423, F.451, F.452, F.453 Ligand excluded by PLIP GOL.47: 8 residues within 4Å: Chain C: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 Ligand excluded by PLIP GOL.48: 4 residues within 4Å: Chain C: Y.145, V.147, K.150, K.220 Ligand excluded by PLIP GOL.57: 11 residues within 4Å: Chain D: W.340, D.342, R.344, I.345, M.378, G.421, A.422, Y.423, F.451, F.452, F.453 Ligand excluded by PLIP GOL.58: 8 residues within 4Å: Chain D: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 Ligand excluded by PLIP GOL.59: 4 residues within 4Å: Chain D: Y.145, V.147, K.150, K.220 Ligand excluded by PLIP

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.49: 7 residues within 4Å: Chain C: S.57, A.58, R.217, S.218, G.219, K.220, L.253 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.57, C:S.218, C:S.218 DTT.60: 7 residues within 4Å: Chain D: S.57, A.58, R.217, S.218, G.219, K.220, L.253 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.57, D:S.218, D:S.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Molecular mechanism of fascin function in filopodial formation. J.Biol.Chem. (2013)

Release Date

2012-11-28

Peptides

Fascin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
A

D
A

Fascin

Related Entries With Identical Sequence