SMTL ID : 4grq.1

Characterization of N- and C- terminus mutants of human MIF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-trimer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: M.103, N.104, N.107 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: G.70, G.71, A.72, Q.73 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: G.70, G.71, A.72, Q.73 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: M.103, N.104, N.107 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain C: G.70, G.71, A.72, Q.73 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain C: M.103, N.104, N.107 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.75 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain A Water bridges: C:S.113, C:S.113, C:S.113, C:S.113, C:T.114, A:R.75 Salt bridges: A:R.75

1 x AVL: 2-methyl-1-[2-(propan-2-yl)pyrazolo[1,5-a]pyridin-3-yl]propan-1-one(Non-covalent)

AVL.8: 8 residues within 4Å: Chain A: F.51, Y.97 Chain C: P.1, A.2, Q.37, Y.38, W.110, F.115 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:W.110, C:F.115, C:F.115, A:F.51, A:Y.97 Hydrogen bonds: C:P.1 Water bridges: C:Q.37 pi-Stacking: C:Y.38, C:Y.38, C:W.110, C:W.110, C:W.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., Characterization of N- and C- terminus mutants of human MIF. To be Published

Release Date

2013-10-02

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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