SMTL ID : 4gvh.1 (1 other biounit)

Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) covalently bound to 5-fluoro-GlcNAc.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 0XY: 5-fluoro-N-acetyl-alpha-D-glucosamine(Post Translational Modification)

0XY.1: 11 residues within 4Å: Chain A: I.30, F.32, D.62, F.117, R.133, K.163, H.164, H.168, M.210, D.248, L.277 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.70, A:R.133, A:R.133, A:K.163, A:H.164

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 4 residues within 4Å: Chain A: R.311, R.312, M.315, D.316 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.312 Water bridges: A:R.311 Salt bridges: A:R.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacik, J.P. et al., Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion. Chem.Biol. (2012)

Release Date

2012-12-19

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-hexosaminidase

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