SMTL ID : 4hzm.2 (1 other biounit)

Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) bound to N-[(3S,4R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]butanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 1BW: N-[(3S,4R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]butanamide(Non-covalent)

1BW.1: 11 residues within 4Å: Chain A: I.30, F.32, D.62, F.117, A.129, R.133, K.163, H.164, H.168, M.210, L.277 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.129 Hydrogen bonds: A:R.133, A:R.133, A:K.163, A:H.164 Water bridges: A:R.70, A:D.249

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 3 residues within 4Å: Chain A: R.47, S.310, R.312 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.310 Water bridges: A:S.310, A:R.311, A:R.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stubbs, K.A. et al., The Development of Selective Inhibitors of NagZ: Increased Susceptibility of Gram-Negative Bacteria to beta-Lactams. Chembiochem (2013)

Release Date

2013-06-19

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-hexosaminidase

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