- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.4: 4 residues within 4Å:- Chain A: H.356, C.361, C.385, H.388
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.356, A:C.361, A:C.385, A:H.388
ZN.10: 4 residues within 4Å:- Chain B: H.356, C.361, C.385, H.388
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.356, B:C.361, B:C.385, B:H.388
ZN.18: 4 residues within 4Å:- Chain C: H.356, C.361, C.385, H.388
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.356, C:C.361, C:C.385, C:H.388
ZN.24: 4 residues within 4Å:- Chain D: H.356, C.361, C.385, H.388
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:H.356, D:C.361, D:C.385, D:H.388
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 6 residues within 4Å:- Chain A: E.446, N.447, Q.450
- Chain B: T.180, N.207, T.211
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.180
CA.11: 6 residues within 4Å:- Chain B: E.446, N.447, Q.450
- Chain C: T.180, N.207, T.211
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Metal complexes: C:T.180, C:T.211, B:E.446
CA.19: 6 residues within 4Å:- Chain C: E.446, N.447, Q.450
- Chain D: T.180, N.207, T.211
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.180
CA.25: 6 residues within 4Å:- Chain A: T.180, N.207, T.211
- Chain D: E.446, N.447, Q.450
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Metal complexes: A:T.180, A:T.211, D:E.446
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.6: 15 residues within 4Å:- Chain A: G.357, R.358, I.359, G.360, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.415, T.416, N.417, R.441
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:G.357, A:R.358, A:I.359, A:G.360, A:R.379, A:Q.380, A:D.394, A:A.395, A:T.396, A:T.415, A:N.417
- Salt bridges: A:R.441, A:R.441
ADP.12: 16 residues within 4Å:- Chain B: G.355, G.357, R.358, I.359, G.360, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.415, T.416, N.417, R.441
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:G.357, B:R.358, B:I.359, B:G.360, B:R.379, B:R.379, B:Q.380, B:D.394, B:A.395, B:T.416
- Salt bridges: B:R.358, B:R.358, B:R.441, B:R.441
ADP.20: 15 residues within 4Å:- Chain C: G.357, R.358, I.359, G.360, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.415, T.416, N.417, R.441
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:G.357, C:R.358, C:I.359, C:G.360, C:R.379, C:Q.380, C:A.395, C:T.396, C:T.396, C:T.415, C:N.417
- Salt bridges: C:R.441, C:R.441
ADP.26: 16 residues within 4Å:- Chain D: G.355, G.357, R.358, I.359, G.360, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.415, T.416, N.417, R.441
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:G.357, D:R.358, D:I.359, D:G.360, D:R.379, D:R.379, D:Q.380, D:D.394, D:D.394, D:A.395, D:T.396
- Salt bridges: D:R.358, D:R.358, D:R.441, D:R.441
- 2 x GLC: alpha-D-glucopyranose(Non-covalent)
GLC.13: 3 residues within 4Å:- Chain B: R.39, A.49, Y.50
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.39, B:Y.50
- Water bridges: B:R.39
GLC.27: 3 residues within 4Å:- Chain D: R.39, A.49, Y.50
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.39, D:Y.50
- Water bridges: D:R.39
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.14: 5 residues within 4Å:- Chain B: Y.251, R.255, W.306, F.458, V.465
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:W.306
- Water bridges: B:R.255, B:W.306
- Salt bridges: B:R.255
PO4.28: 5 residues within 4Å:- Chain D: Y.251, R.255, W.306, F.458, V.465
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:W.306
- Water bridges: D:R.255, D:W.306
- Salt bridges: D:R.255
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kong, C. et al., Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel. elife (2012)
- Release Date
- 2012-12-26
- Peptides
- TrkA domain protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x GLC: alpha-D-glucopyranose(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kong, C. et al., Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel. elife (2012)
- Release Date
- 2012-12-26
- Peptides
- TrkA domain protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B - Membrane
-
We predict this structure to be a membrane protein.