- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.4: 4 residues within 4Å:- Chain A: H.356, C.361, C.385, H.388
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.356, A:C.361, A:C.385, A:H.388
ZN.13: 4 residues within 4Å:- Chain B: H.356, C.361, C.385, H.388
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.356, B:C.361, B:C.385
ZN.19: 4 residues within 4Å:- Chain C: H.356, C.361, C.385, H.388
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.356, C:C.361, C:C.385, C:H.388
ZN.28: 4 residues within 4Å:- Chain D: H.356, C.361, C.385, H.388
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:H.356, D:C.361, D:C.385
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 6 residues within 4Å:- Chain A: T.180, N.207, T.211
- Chain D: E.446, N.447, Q.450
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Metal complexes: A:T.180, D:E.446
CA.6: 6 residues within 4Å:- Chain A: E.446, N.447, Q.450
- Chain B: T.180, N.207, T.211
No protein-ligand interaction detected (PLIP)CA.20: 6 residues within 4Å:- Chain B: E.446, N.447, Q.450
- Chain C: T.180, N.207, T.211
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Metal complexes: B:E.446, C:T.180
CA.21: 6 residues within 4Å:- Chain C: E.446, N.447, Q.450
- Chain D: T.180, N.207, T.211
No protein-ligand interaction detected (PLIP)- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.7: 15 residues within 4Å:- Chain A: G.355, G.357, R.358, I.359, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.415, T.416, N.417, R.441
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:R.358, A:I.359, A:R.379, A:R.379, A:Q.380, A:D.394, A:D.394, A:A.395, A:T.396, A:T.416
- Salt bridges: A:R.441
- pi-Cation interactions: A:R.379
ADP.14: 16 residues within 4Å:- Chain B: G.355, G.357, R.358, I.359, G.360, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.416, N.417, T.421, R.441
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:G.357, B:R.358, B:I.359, B:G.360, B:R.379, B:Q.380, B:Q.380, B:D.394, B:A.395, B:T.396, B:T.396, B:T.416, B:N.417, B:N.417
- Salt bridges: B:R.441, B:R.441
ADP.22: 15 residues within 4Å:- Chain C: G.355, G.357, R.358, I.359, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.415, T.416, N.417, R.441
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:R.358, C:I.359, C:R.379, C:R.379, C:Q.380, C:D.394, C:A.395, C:T.396
- Salt bridges: C:R.441
- pi-Cation interactions: C:R.379
ADP.29: 16 residues within 4Å:- Chain D: G.355, G.357, R.358, I.359, G.360, D.378, R.379, Q.380, G.393, D.394, A.395, T.396, T.416, N.417, T.421, R.441
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:G.357, D:R.358, D:I.359, D:G.360, D:R.379, D:Q.380, D:Q.380, D:A.395, D:T.396, D:T.396, D:T.396, D:N.417, D:N.417
- Salt bridges: D:R.441, D:R.441
- 6 x GLC: alpha-D-glucopyranose(Non-covalent)
GLC.8: 3 residues within 4Å:- Chain A: R.246, I.265, R.369
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.369
- Water bridges: A:R.246, A:R.246
- Salt bridges: A:R.246
GLC.9: 5 residues within 4Å:- Chain A: D.368, V.372, P.373, F.374, V.389
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.372, A:F.374, A:V.389
GLC.15: 2 residues within 4Å:- Chain B: W.43, A.49
No protein-ligand interaction detected (PLIP)GLC.23: 3 residues within 4Å:- Chain C: R.246, I.265, R.369
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.369
- Water bridges: C:R.246, C:R.246
- Salt bridges: C:R.246
GLC.24: 5 residues within 4Å:- Chain C: D.368, V.372, P.373, F.374, V.389
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:V.372, C:F.374, C:V.389
GLC.30: 2 residues within 4Å:- Chain D: W.43, A.49
No protein-ligand interaction detected (PLIP)- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kong, C. et al., Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel. elife (2012)
- Release Date
- 2012-12-26
- Peptides
- TrkA domain protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x GLC: alpha-D-glucopyranose(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kong, C. et al., Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel. elife (2012)
- Release Date
- 2012-12-26
- Peptides
- TrkA domain protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D - Membrane
-
We predict this structure to be a membrane protein.