- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 4 residues within 4Å:- Chain A: W.173, Y.270, C.294, A.347
2 PLIP interactions:2 interactions with chain A- Water bridges: A:A.347, A:R.350
BME.9: 4 residues within 4Å:- Chain B: W.173, Y.270, C.294, A.347
2 PLIP interactions:2 interactions with chain B- Water bridges: B:A.347, B:R.350
BME.16: 4 residues within 4Å:- Chain C: W.173, Y.270, C.294, A.347
2 PLIP interactions:2 interactions with chain C- Water bridges: C:A.347, C:R.350
BME.23: 4 residues within 4Å:- Chain D: W.173, Y.270, C.294, A.347
2 PLIP interactions:2 interactions with chain D- Water bridges: D:A.347, D:R.350
- 4 x 5HN: 5-hydroxypyridine-3-carboxylic acid(Non-covalent)
5HN.3: 9 residues within 4Å:- Chain A: R.211, L.213, Y.223, M.227, Y.270, P.295, A.296, L.352
- Ligands: FAD.1
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:P.295
- Hydrogen bonds: A:Y.223, A:Y.270
- Water bridges: A:R.211, A:A.296, A:A.296
- Salt bridges: A:R.211
5HN.10: 9 residues within 4Å:- Chain B: R.211, L.213, Y.223, M.227, Y.270, P.295, A.296, L.352
- Ligands: FAD.8
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:P.295
- Hydrogen bonds: B:Y.223, B:Y.270
- Water bridges: B:R.211, B:A.296, B:A.296
- Salt bridges: B:R.211
5HN.17: 9 residues within 4Å:- Chain C: R.211, L.213, Y.223, M.227, Y.270, P.295, A.296, L.352
- Ligands: FAD.15
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:P.295
- Hydrogen bonds: C:Y.82, C:Y.223, C:Y.223, C:Y.270, C:Y.270
- Water bridges: C:R.211, C:A.296, C:A.296
- Salt bridges: C:R.211
5HN.24: 9 residues within 4Å:- Chain D: R.211, L.213, Y.223, M.227, Y.270, P.295, A.296, L.352
- Ligands: FAD.22
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:P.295
- Hydrogen bonds: D:Y.82, D:Y.223, D:Y.223, D:Y.270, D:Y.270
- Water bridges: D:R.211, D:A.296, D:A.296
- Salt bridges: D:R.211
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 8 residues within 4Å:- Chain A: N.97, P.378
- Chain B: L.73, Q.74, G.75, S.76, N.218, E.219
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:L.73, B:G.75, B:E.219, A:N.97
- Water bridges: B:Q.74, B:H.77
GOL.5: 3 residues within 4Å:- Chain A: E.364, R.367, Y.375
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.364, A:R.367, A:R.367
GOL.6: 5 residues within 4Å:- Chain A: K.169, Q.170, D.171, K.274, D.276
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.169, A:K.169
GOL.11: 8 residues within 4Å:- Chain A: L.73, Q.74, G.75, S.76, N.218, E.219
- Chain B: N.97, P.378
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:L.73, A:G.75, A:E.219, B:N.97
- Water bridges: A:Q.74, A:H.77
GOL.12: 3 residues within 4Å:- Chain B: E.364, R.367, Y.375
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.364, B:R.367, B:R.367
GOL.13: 5 residues within 4Å:- Chain B: K.169, Q.170, D.171, K.274, D.276
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.169, B:K.169
GOL.18: 8 residues within 4Å:- Chain C: N.97, P.378
- Chain D: L.73, Q.74, G.75, S.76, N.218, E.219
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:L.73, D:G.75, D:E.219, C:N.97
- Water bridges: D:Q.74, D:E.219
GOL.19: 3 residues within 4Å:- Chain C: E.364, R.367, Y.375
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.364, C:R.367, C:R.367
GOL.20: 5 residues within 4Å:- Chain C: K.169, Q.170, D.171, K.274, D.276
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.169, C:K.169
- Water bridges: C:D.171
GOL.25: 8 residues within 4Å:- Chain C: L.73, Q.74, G.75, S.76, N.218, E.219
- Chain D: N.97, P.378
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:L.73, C:G.75, C:E.219, D:N.97
- Water bridges: C:Q.74, C:E.219
GOL.26: 3 residues within 4Å:- Chain D: E.364, R.367, Y.375
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.364, D:R.367, D:R.367
GOL.27: 5 residues within 4Å:- Chain D: K.169, Q.170, D.171, K.274, D.276
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.169, D:K.169
- Water bridges: D:D.171
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.7: 3 residues within 4Å:- Chain A: N.88, E.247
- Chain C: V.91
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.88
- Water bridges: A:N.204, A:M.248
PEG.14: 3 residues within 4Å:- Chain B: N.88, E.247
- Chain D: V.91
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.88
- Water bridges: B:N.204, B:M.248
PEG.21: 3 residues within 4Å:- Chain A: V.91
- Chain C: N.88, E.247
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.88
- Water bridges: C:N.204, C:M.248
PEG.28: 3 residues within 4Å:- Chain B: V.91
- Chain D: N.88, E.247
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.88
- Water bridges: D:N.204, D:M.248
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kobayashi, J. et al., Crystal structure of 2-Methyl-3-hydroxypyridiine-5-carboxylic acid oxygenase. To be Published
- Release Date
- 2013-09-18
- Peptides
- 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 4 x 5HN: 5-hydroxypyridine-3-carboxylic acid(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kobayashi, J. et al., Crystal structure of 2-Methyl-3-hydroxypyridiine-5-carboxylic acid oxygenase. To be Published
- Release Date
- 2013-09-18
- Peptides
- 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A