SMTL ID : 4hor.1

Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligocytidine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x CTP- C- C- C- C: RNA (5'-R(*(CTP)P*CP*CP*CP*C)-3')(Non-covalent)

CTP-C-C-C-C.1: 26 residues within 4Å: Chain A: E.33, T.37, Q.41, K.150, G.152, G.153, Y.156, Y.185, R.186, R.192, Y.250, R.253, Y.254, K.257, R.260, F.284, H.287, Q.288, L.291, R.294, F.337, F.339, D.343, H.374, Q.377 Ligands: MG.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:T.37, A:Q.41, A:G.153, A:Y.156, A:Y.216, A:Y.250 Water bridges: A:E.33, A:K.48, A:K.48, A:F.151, A:Y.156, A:R.186, A:R.186, A:R.186, A:R.186, A:R.253, A:F.284, A:H.374 Salt bridges: A:K.150, A:K.150, A:K.150, A:R.186, A:R.186, A:R.253, A:R.253

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.33, K.150 Ligands: CTP-C-C-C-C.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.33, H2O.1, H2O.3, H2O.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbas, Y.M. et al., Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins. Nature (2013)

Release Date

2013-01-23

Peptides

Interferon-induced protein with tetratricopeptide repeats 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon-induced protein with tetratricopeptide repeats 5

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