SMTL ID : 4hot.1

Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligoadenine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x ATP- A- A- A: RNA (5'-R(*(ATP)P*AP*AP*A)-3')(Non-covalent)

ATP-A-A-A.1: 26 residues within 4Å: Chain A: E.33, T.37, Q.41, K.150, G.153, Y.156, Y.185, R.186, D.189, R.192, Y.250, R.253, Y.254, K.257, R.260, F.284, H.287, Q.288, L.291, F.337, F.339, D.373, H.374, Q.377, P.411 Ligands: MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:T.37, A:T.37, A:Q.41, A:G.153, A:R.186, A:Y.250 Water bridges: A:E.33, A:T.37, A:K.150, A:R.186, A:R.186, A:R.186, A:R.253, A:F.284, A:T.371 Salt bridges: A:K.150, A:K.150, A:K.150, A:R.186, A:R.186, A:R.253, A:R.253 pi-Stacking: A:Y.156

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.33 Ligands: ATP-A-A-A.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.33, H2O.1, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbas, Y.M. et al., Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins. Nature (2013)

Release Date

2013-01-23

Peptides

Interferon-induced protein with tetratricopeptide repeats 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon-induced protein with tetratricopeptide repeats 5

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