SMTL ID : 4hos.1

Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligouridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x UTP- U- U- U: RNA (5'-R(*(UTP)P*UP*UP*U)-3')(Non-covalent)

UTP-U-U-U.1: 25 residues within 4Å: Chain A: E.33, T.37, Q.41, K.150, G.152, G.153, Y.156, Y.185, R.186, Y.250, R.253, Y.254, K.257, R.260, F.284, H.287, Q.288, L.291, R.294, D.334, F.337, F.339, D.343, Q.377 Ligands: NA.2 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:Q.41, A:G.153, A:Y.156, A:Y.250, A:Y.250 Water bridges: A:E.33, A:Q.41, A:K.150, A:K.150, A:Y.156, A:R.186, A:R.186, A:R.186, A:R.253, A:R.253, A:R.253, A:Y.254, A:F.284, A:H.374, A:H.374 Salt bridges: A:K.150, A:K.150, A:K.150, A:R.186, A:R.186, A:R.253, A:R.253

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: E.33 Ligands: UTP-U-U-U.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbas, Y.M. et al., Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins. Nature (2013)

Release Date

2013-01-23

Peptides

Interferon-induced protein with tetratricopeptide repeats 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon-induced protein with tetratricopeptide repeats 5

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