Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 4i80.1
Crystal structure of human menin in complex with a high-affinity macrocyclic peptidomimetics
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 3.10 Å
Oligo State
homo-dimer
Ligands
2 x
ACE
-
ARG
-
TRP
-
1E3
-
PHE
-
PRO
-
ALA
-
ARG
-
PRO
:
macrocyclic peptidomimetic
(Non-covalent)
ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.1:
23 residues within 4Å:
Chain A:
D.136
,
R.137
,
A.138
,
D.153
,
S.154
,
S.155
,
S.178
,
E.179
,
D.180
,
H.181
,
F.238
,
C.241
,
N.244
,
S.246
,
M.278
,
N.282
,
Y.319
,
Y.323
,
E.359
,
E.363
Chain B:
D.136
,
R.137
Ligands:
ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.2
15
PLIP interactions
:
13 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:F.238
,
A:Y.319
,
A:Y.323
Hydrogen bonds:
A:D.136
,
A:A.138
,
A:C.241
,
A:N.244
,
A:S.246
,
A:Y.323
,
A:E.359
Salt bridges:
A:D.136
,
A:E.359
,
A:E.363
,
B:D.136
pi-Cation interactions:
B:F.134
ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.2:
23 residues within 4Å:
Chain A:
D.136
,
R.137
Chain B:
D.136
,
R.137
,
A.138
,
D.153
,
S.154
,
S.155
,
S.178
,
E.179
,
D.180
,
H.181
,
F.238
,
C.241
,
N.244
,
S.246
,
M.278
,
N.282
,
Y.319
,
Y.323
,
E.359
,
E.363
Ligands:
ACE-ARG-TRP-1E3-PHE-PRO-ALA-ARG-PRO.1
15
PLIP interactions
:
13 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:F.238
,
B:Y.319
,
B:Y.323
Hydrogen bonds:
B:D.136
,
B:A.138
,
B:C.241
,
B:N.244
,
B:S.246
,
B:Y.319
,
B:E.359
Salt bridges:
B:D.136
,
B:E.359
,
B:E.363
,
A:D.136
pi-Cation interactions:
A:F.134
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Zhou, H. et al., Structure-Based Design of High-Affinity Macrocyclic Peptidomimetics to Block the Menin-Mixed Lineage Leukemia 1 (MLL1) Protein-Protein Interaction. J.Med.Chem. (2013)
Release Date
2013-03-06
Peptides
Menin:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Menin
Toggle Identical (AB)
Related Entries With Identical Sequence
3u84.1
|
3u84.2
|
3u84.3
|
3u85.1
|
3u85.2
|
3u86.1
|
3u88.1
|
3u88.2
|
6b41.1
|
6e1a.1
|
6wnh.1
|
7m4t.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme