SMTL ID : 4ihb.4 (7 other biounits)

X-RAY STRUCTURE OF THE canonical C2A DOMAIN FROM HUMAN DYSFERLIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: G.35, V.36, K.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.35, A:K.37 FMT.2: 4 residues within 4Å: Chain A: K.38, E.56, W.57, D.58 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.38, A:K.38, A:D.58, A:K.60 FMT.3: 4 residues within 4Å: Chain A: K.38, F.55, E.56 Ligands: FMT.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.56 FMT.4: 4 residues within 4Å: Chain A: K.41, W.51, N.52, E.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.52 FMT.5: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.54 FMT.6: 4 residues within 4Å: Chain A: V.36, K.37, K.38 Ligands: FMT.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.38 FMT.7: 5 residues within 4Å: Chain A: K.38, R.39, F.55 Ligands: FMT.3, FMT.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.39 FMT.8: 3 residues within 4Å: Chain A: K.37 Ligands: FMT.6, FMT.7 No protein-ligand interaction detected (PLIP) FMT.9: 3 residues within 4Å: Chain A: V.32, H.71 Ligands: FMT.11 No protein-ligand interaction detected (PLIP) FMT.10: 4 residues within 4Å: Chain A: F.33, A.34, E.69 Ligands: FMT.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.34, A:E.69 FMT.11: 7 residues within 4Å: Chain A: V.32, F.33, A.34, G.35, E.69 Ligands: FMT.9, FMT.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.35 FMT.12: 2 residues within 4Å: Chain A: N.107, V.123 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuson, K. et al., Alternate Splicing of Dysferlin C2A Confers Ca(2+)-Dependent and Ca(2+)-Independent Binding for Membrane Repair. Structure (2014)

Release Date

2013-12-18

Peptides

Dysferlin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Dysferlin

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