SMTL ID : 4ihb.5 (7 other biounits)

X-RAY STRUCTURE OF THE canonical C2A DOMAIN FROM HUMAN DYSFERLIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: R.8, S.101, L.102, S.103, S.127, Y.128 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.8, A:S.103, A:Y.128 Water bridges: A:T.129 FMT.2: 5 residues within 4Å: Chain A: K.38, R.39, F.55 Ligands: FMT.3, FMT.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.39 FMT.3: 2 residues within 4Å: Chain A: K.37 Ligands: FMT.2 No protein-ligand interaction detected (PLIP) FMT.4: 5 residues within 4Å: Chain A: R.39, T.40, K.41, E.53 Ligands: FMT.2 No protein-ligand interaction detected (PLIP) FMT.5: 5 residues within 4Å: Chain A: N.16, V.17, H.18, T.118, A.120 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.18, A:T.118 Water bridges: A:H.18, A:L.86 FMT.6: 3 residues within 4Å: Chain A: A.89, K.90, P.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.90, A:K.90

1 x CA: CALCIUM ION(Non-covalent)

CA.7: 4 residues within 4Å: Chain A: D.23, I.24, D.26, N.45 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.23, A:I.24, A:D.26, A:D.26, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuson, K. et al., Alternate Splicing of Dysferlin C2A Confers Ca(2+)-Dependent and Ca(2+)-Independent Binding for Membrane Repair. Structure (2014)

Release Date

2013-12-18

Peptides

Dysferlin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Dysferlin

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