SMTL ID : 4ihb.7 (7 other biounits)

X-RAY STRUCTURE OF THE canonical C2A DOMAIN FROM HUMAN DYSFERLIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-hexamer

Ligands

38 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: F.33, A.34, E.69 Ligand excluded by PLIP FMT.2: 5 residues within 4Å: Chain A: S.103, A.104, S.105, Q.125 Chain E: N.107 Ligand excluded by PLIP FMT.3: 3 residues within 4Å: Chain A: K.38, R.39, F.55 Ligand excluded by PLIP FMT.4: 3 residues within 4Å: Chain A: K.41, W.51, N.52 Ligand excluded by PLIP FMT.5: 6 residues within 4Å: Chain A: Y.13, E.15, N.107, V.123 Chain E: S.101, S.103 Ligand excluded by PLIP FMT.6: 6 residues within 4Å: Chain A: H.18, T.19, T.22, D.23, I.24, S.25 Ligand excluded by PLIP FMT.7: 3 residues within 4Å: Chain A: G.35, V.36, K.37 Ligand excluded by PLIP FMT.8: 5 residues within 4Å: Chain A: Q.66, L.97 Chain B: A.89, K.90, P.109 Ligand excluded by PLIP FMT.9: 5 residues within 4Å: Chain B: V.36, K.38, E.56, W.57, D.58 Ligand excluded by PLIP FMT.10: 3 residues within 4Å: Chain B: F.33, A.34, E.69 Ligand excluded by PLIP FMT.11: 4 residues within 4Å: Chain B: K.38, G.54, F.55, E.56 Ligand excluded by PLIP FMT.12: 3 residues within 4Å: Chain B: K.38, R.39, F.55 Ligand excluded by PLIP FMT.13: 8 residues within 4Å: Chain A: P.100, L.102 Chain B: P.109, L.110, P.117, T.118, G.119, A.120 Ligand excluded by PLIP FMT.14: 4 residues within 4Å: Chain A: P.100 Chain B: N.16, G.119, S.121 Ligand excluded by PLIP FMT.15: 6 residues within 4Å: Chain B: E.15 Chain D: S.101, L.102, S.103, S.127, Y.128 Ligand excluded by PLIP FMT.16: 5 residues within 4Å: Chain C: I.43, S.46, N.48, P.49, V.50 Ligand excluded by PLIP FMT.17: 3 residues within 4Å: Chain C: G.35, V.36, K.37 Ligand excluded by PLIP FMT.18: 3 residues within 4Å: Chain C: E.95, S.105, F.106 Ligand excluded by PLIP FMT.19: 1 residues within 4Å: Chain C: E.95 Ligand excluded by PLIP FMT.20: 3 residues within 4Å: Chain D: F.33, A.34, E.69 Ligand excluded by PLIP FMT.21: 5 residues within 4Å: Chain B: N.107 Chain D: S.103, A.104, S.105, Q.125 Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain D: K.38, R.39, F.55 Ligand excluded by PLIP FMT.23: 3 residues within 4Å: Chain D: K.41, W.51, N.52 Ligand excluded by PLIP FMT.24: 6 residues within 4Å: Chain B: S.101, S.103 Chain D: Y.13, E.15, N.107, V.123 Ligand excluded by PLIP FMT.25: 6 residues within 4Å: Chain D: H.18, T.19, T.22, D.23, I.24, S.25 Ligand excluded by PLIP FMT.26: 3 residues within 4Å: Chain D: G.35, V.36, K.37 Ligand excluded by PLIP FMT.27: 5 residues within 4Å: Chain D: Q.66, L.97 Chain E: A.89, K.90, P.109 Ligand excluded by PLIP FMT.28: 5 residues within 4Å: Chain E: V.36, K.38, E.56, W.57, D.58 Ligand excluded by PLIP FMT.29: 3 residues within 4Å: Chain E: F.33, A.34, E.69 Ligand excluded by PLIP FMT.30: 4 residues within 4Å: Chain E: K.38, G.54, F.55, E.56 Ligand excluded by PLIP FMT.31: 3 residues within 4Å: Chain E: K.38, R.39, F.55 Ligand excluded by PLIP FMT.32: 8 residues within 4Å: Chain D: P.100, L.102 Chain E: P.109, L.110, P.117, T.118, G.119, A.120 Ligand excluded by PLIP FMT.33: 4 residues within 4Å: Chain D: P.100 Chain E: N.16, G.119, S.121 Ligand excluded by PLIP FMT.34: 6 residues within 4Å: Chain A: S.101, L.102, S.103, S.127, Y.128 Chain E: E.15 Ligand excluded by PLIP FMT.35: 5 residues within 4Å: Chain F: I.43, S.46, N.48, P.49, V.50 Ligand excluded by PLIP FMT.36: 3 residues within 4Å: Chain F: G.35, V.36, K.37 Ligand excluded by PLIP FMT.37: 3 residues within 4Å: Chain F: E.95, S.105, F.106 Ligand excluded by PLIP FMT.38: 1 residues within 4Å: Chain F: E.95 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuson, K. et al., Alternate Splicing of Dysferlin C2A Confers Ca(2+)-Dependent and Ca(2+)-Independent Binding for Membrane Repair. Structure (2014)

Release Date

2013-12-18

Peptides

Dysferlin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Dysferlin

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