SMTL ID : 4ihi.2 (2 other biounits)

Crystal structure of the Delta-pyrroline-5-carboxylate dehydrogenase from Mycobacterium tuberculosis bound with NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-hexamer

Ligands

6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: Y.204, I.206, T.207, P.208, F.209, N.210, I.214, K.232, P.233, S.234, D.264, G.265, F.266, S.269, F.283, T.284, G.285, S.286, T.289, H.292, E.313, T.314, G.315, C.347, F.447, L.476 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.214, A:T.284 Hydrogen bonds: A:T.207, A:F.209, A:K.232, A:S.269, A:S.286, A:T.289, A:H.292, A:E.313, A:K.529 Water bridges: A:K.232, A:S.234, A:G.315, A:R.393 NAD.2: 26 residues within 4Å: Chain B: Y.204, I.206, T.207, P.208, F.209, N.210, I.214, K.232, P.233, S.234, D.264, G.265, F.266, S.269, F.283, T.284, G.285, S.286, T.289, H.292, E.313, T.314, G.315, C.347, F.447, L.476 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.214, B:T.284 Hydrogen bonds: B:T.207, B:F.209, B:K.232, B:S.269, B:S.286, B:T.289, B:H.292, B:E.313, B:K.529 Water bridges: B:K.232, B:S.234, B:G.315, B:R.393 NAD.3: 26 residues within 4Å: Chain C: Y.204, I.206, T.207, P.208, F.209, N.210, I.214, K.232, P.233, S.234, D.264, G.265, F.266, S.269, F.283, T.284, G.285, S.286, T.289, H.292, E.313, T.314, G.315, C.347, F.447, L.476 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:I.214, C:T.284 Hydrogen bonds: C:T.207, C:F.209, C:K.232, C:S.269, C:S.286, C:T.289, C:H.292, C:E.313, C:K.529 Water bridges: C:K.232, C:S.234, C:G.315, C:R.393 NAD.4: 26 residues within 4Å: Chain D: Y.204, I.206, T.207, P.208, F.209, N.210, I.214, K.232, P.233, S.234, D.264, G.265, F.266, S.269, F.283, T.284, G.285, S.286, T.289, H.292, E.313, T.314, G.315, C.347, F.447, L.476 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:I.214, D:T.284 Hydrogen bonds: D:Y.204, D:T.207, D:F.209, D:K.232, D:S.269, D:S.286, D:H.292, D:E.313, D:K.529 Water bridges: D:K.232, D:S.234, D:G.315, D:R.393 NAD.5: 26 residues within 4Å: Chain E: Y.204, I.206, T.207, P.208, F.209, N.210, I.214, K.232, P.233, S.234, D.264, G.265, F.266, S.269, F.283, T.284, G.285, S.286, T.289, H.292, E.313, T.314, G.315, C.347, F.447, L.476 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:I.214, E:T.284 Hydrogen bonds: E:Y.204, E:T.207, E:F.209, E:K.232, E:S.269, E:S.286, E:H.292, E:E.313, E:K.529 Water bridges: E:K.232, E:S.234, E:G.315, E:R.393 NAD.6: 26 residues within 4Å: Chain F: Y.204, I.206, T.207, P.208, F.209, N.210, I.214, K.232, P.233, S.234, D.264, G.265, F.266, S.269, F.283, T.284, G.285, S.286, T.289, H.292, E.313, T.314, G.315, C.347, F.447, L.476 15 PLIP interactions: 15 interactions with chain F Hydrophobic interactions: F:I.214, F:T.284 Hydrogen bonds: F:Y.204, F:T.207, F:F.209, F:K.232, F:S.269, F:S.286, F:H.292, F:E.313, F:K.529 Water bridges: F:K.232, F:S.234, F:G.315, F:R.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lagautriere, T. et al., Characterization of the proline-utilization pathway in Mycobacterium tuberculosis through structural and functional studies. Acta Crystallogr.,Sect.D (2014)

Release Date

2013-12-18

Peptides

Delta-1-pyrroline-5-carboxylate dehydrogenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Delta-1-pyrroline-5-carboxylate dehydrogenase

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