SMTL ID : 4ir3.1

Crystal Structure of the bromodomain of human BAZ2B in complex with 1-[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone (GSK2833282A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.62, Q.67, Y.68, P.69, T.73, D.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.62, A:Q.67, A:T.73, A:D.77 EDO.2: 2 residues within 4Å: Chain A: E.90, D.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.92, A:D.92 Water bridges: A:E.90, A:E.90 EDO.3: 2 residues within 4Å: Chain A: E.90, D.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.90, A:D.91 Water bridges: A:D.92

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: K.51, K.52, P.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.51, A:P.53 GOL.5: 4 residues within 4Å: Chain A: T.27, H.28, E.29, Y.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.27, A:E.29

1 x 1FK: 1-[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone(Non-covalent)

1FK.6: 8 residues within 4Å: Chain A: W.32, P.33, F.34, V.38, V.43, Y.46, N.89, I.95 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.33, A:F.34, A:V.43, A:I.95 Hydrogen bonds: A:N.89 pi-Stacking: A:W.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B. J.Med.Chem. (2016)

Release Date

2013-01-23

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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