SMTL ID : 4ir5.1

Crystal Structure of the bromodomain of human BAZ2B in complex with 1-{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-yl}ethanone (GSK2847449A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: N.89, I.95 Ligands: IR5.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.89 EDO.2: 3 residues within 4Å: Chain A: L.42, P.44 Ligands: IR5.13 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain A: D.83, E.86, T.87, R.103 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.83, A:E.86, A:T.87, A:R.103 Water bridges: A:R.103 EDO.4: 3 residues within 4Å: Chain A: P.7, K.8, R.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.9 EDO.5: 4 residues within 4Å: Chain A: D.91, D.92, R.97 Ligands: EDO.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.97 EDO.6: 2 residues within 4Å: Chain A: W.32 Ligands: IR5.13 No protein-ligand interaction detected (PLIP) EDO.7: 7 residues within 4Å: Chain A: W.32, P.33, L.35, L.36, P.37, V.38 Ligands: IR5.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.32, A:L.35, A:L.36, A:P.37 EDO.8: 5 residues within 4Å: Chain A: M.20, I.21, E.24, K.109, T.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.24, A:T.113 EDO.9: 4 residues within 4Å: Chain A: L.40, K.41, P.44, G.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.41, A:G.45 Water bridges: A:K.47 EDO.10: 5 residues within 4Å: Chain A: V.49, I.50, K.51, K.52, T.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.51, A:K.52, A:T.87 Water bridges: A:V.49 EDO.11: 2 residues within 4Å: Chain A: R.79, E.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.79 EDO.12: 5 residues within 4Å: Chain A: D.91, R.97, H.100, N.101 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.91, A:N.101

1 x IR5: 1-{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-yl}ethanone(Non-covalent)

IR5.13: 14 residues within 4Å: Chain A: W.32, P.33, F.34, V.38, N.39, L.42, V.43, Y.46, N.89, I.95 Ligands: EDO.1, EDO.2, EDO.6, EDO.7 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.32, A:W.32, A:F.34, A:V.38, A:L.42, A:V.43, A:V.43, A:I.95 Hydrogen bonds: A:N.39, A:N.89 Water bridges: A:N.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B. J.Med.Chem. (2016)

Release Date

2013-01-23

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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