SMTL ID : 4ir6.1

Crystal Structure of the bromodomain of human BAZ2B in complex with 1-{1-[2-(METHYLSULFONYL)PHENYL]-7-PHENOXYINDOLIZIN-3-YL}ETHANONE (GSK2838097A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: D.83, E.86, T.87, R.103 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.83, A:E.86, A:R.103 Water bridges: A:R.103 EDO.2: 3 residues within 4Å: Chain A: H.28, E.29, Y.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.29, A:Y.105 Water bridges: A:Y.105 EDO.3: 4 residues within 4Å: Chain A: R.9, L.17, T.113, F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9, A:F.114 EDO.4: 5 residues within 4Å: Chain A: L.17, M.20, I.21, E.24, T.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.24, A:T.113 EDO.5: 3 residues within 4Å: Chain A: T.23, E.26, R.60 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.23, A:R.60 Water bridges: A:E.26, A:E.26, A:E.26 EDO.6: 5 residues within 4Å: Chain A: L.71, E.72, W.110, F.114, K.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.110, A:K.115

1 x IR6: 1-{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-yl}ethanone(Non-covalent)

IR6.7: 11 residues within 4Å: Chain A: W.32, P.33, F.34, L.36, P.37, V.38, N.39, L.42, V.43, N.89, I.95 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.32, A:P.33, A:F.34, A:V.38, A:V.43 Hydrogen bonds: A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B. J.Med.Chem. (2016)

Release Date

2013-01-23

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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