SMTL ID : 4ivs.1

Crystal structure of BACE1 with its inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x VSI: N-{N-[4-(acetylamino)-3,5-dichlorobenzyl]carbamimidoyl}-2-(6-cyano-1H-indol-1-yl)acetamide(Non-covalent)

VSI.1: 15 residues within 4Å: Chain A: L.70, D.72, Y.111, T.112, G.114, K.147, F.148, I.150, W.155, D.268, G.270, T.271, R.275, S.368, T.369 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.150, A:T.369 Hydrogen bonds: A:F.148, A:T.271, A:T.271, A:R.275, A:R.275, A:S.368 Salt bridges: A:D.72, A:D.268 pi-Stacking: A:Y.111, A:F.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zou, Y. et al., Virtual screening and structure-based discovery of indole acylguanidines as potent beta-secretase (BACE1) inhibitors. Molecules (2013)

Release Date

2013-11-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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