SMTL ID : 4j03.1

Crystal structure of human soluble epoxide hydrolase complexed with fulvestrant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: D.9, L.10, D.11, T.123, N.124, K.160, D.185 Ligands: MG.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.10, A:D.11, A:T.123, A:N.124 Water bridges: A:D.9, A:D.11 Salt bridges: A:K.160 PO4.4: 8 residues within 4Å: Chain B: D.9, L.10, D.11, T.123, N.124, K.160, D.185 Ligands: MG.5 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.10, B:D.11, B:N.124 Water bridges: B:D.9, B:D.11, B:D.11 Salt bridges: B:K.160

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.9, D.11, D.184, D.185 Ligands: PO4.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.9, A:D.11, A:D.185, H2O.1, H2O.1 MG.5: 5 residues within 4Å: Chain B: D.9, D.11, D.184, D.185 Ligands: PO4.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.9, B:D.11, B:D.185, H2O.1, H2O.1

2 x FVS: (7beta,9beta,13alpha,17beta)-7-{9-[(R)-(4,4,5,5,5-pentafluoropentyl)sulfinyl]nonyl}estra-1(10),2,4-triene-3,17-diol(Non-covalent)

FVS.3: 18 residues within 4Å: Chain A: F.267, D.335, W.336, Y.343, I.363, S.374, F.381, Y.383, Q.384, F.387, L.408, L.428, Y.466, M.469, N.472, L.499, H.524, W.525 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.363, A:F.381, A:L.499 Hydrogen bonds: A:Y.343, A:Y.466, A:N.472, A:N.472 Salt bridges: A:D.335 Halogen bonds: A:F.267, A:Y.466 FVS.6: 18 residues within 4Å: Chain B: F.267, D.335, W.336, Y.343, I.363, S.374, F.381, Y.383, Q.384, F.387, L.408, L.428, Y.466, M.469, N.472, L.499, H.524, W.525 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.363, B:F.381, B:L.499 Hydrogen bonds: B:Y.383, B:N.472, B:N.472 Salt bridges: B:D.335 Halogen bonds: B:F.267, B:Y.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morisseau, C. et al., Inhibition of soluble epoxide hydrolase by fulvestrant and sulfoxides. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-06-05

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

Related Entries With Identical Sequence