SMTL ID : 4j39.1

Crystal structure of p19 in complex with double-helical 19mer RNA p(CAG)3C(CUG)3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.6, F.48, R.50 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.6, A:S.6 Water bridges: A:K.49, A:R.50 Salt bridges: A:R.50 SO4.2: 2 residues within 4Å: Chain A: S.16, T.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.16, A:S.16 Water bridges: A:W.17 SO4.3: 4 residues within 4Å: Chain A: T.69, G.70, C.112, I.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.70 Water bridges: A:T.69, A:D.71 SO4.4: 4 residues within 4Å: Chain A: Q.31, R.93, R.95, G.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.31, A:G.96 Water bridges: A:R.95 Salt bridges: A:R.93 SO4.5: 3 residues within 4Å: Chain C: S.6, F.48, R.50 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.6, C:S.6 Water bridges: C:K.49, C:R.50 Salt bridges: C:R.50 SO4.6: 2 residues within 4Å: Chain C: S.16, T.18 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.16, C:S.16 Water bridges: C:W.17 SO4.7: 4 residues within 4Å: Chain C: T.69, G.70, C.112, I.116 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.70 Water bridges: C:T.69, C:D.71 SO4.8: 4 residues within 4Å: Chain C: Q.31, R.93, R.95, G.96 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.31, C:G.96 Water bridges: C:R.95 Salt bridges: C:R.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katorcha, E. et al., Procrustean bed of RNA silencing suppression. To be Published

Release Date

2014-02-05

Peptides

RNA silencing suppressor p19: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

RNA silencing suppressor p19

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