SMTL ID : 4j5a.1

Human Cyclophilin D Complexed with an Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x 67Z: 1-(4-aminobenzyl)-3-{2-[(2R)-2-(2,5-dimethoxyphenyl)pyrrolidin-1-yl]-2-oxoethyl}urea(Non-covalent)

67Z.1: 14 residues within 4Å: Chain A: R.54, F.59, M.60, Q.62, G.71, A.100, N.101, T.106, G.108, Q.110, F.112, W.120, L.121, H.125 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.59, A:F.59 Hydrogen bonds: A:R.54, A:Q.62, A:N.101, A:N.101, A:N.101 Water bridges: A:A.100, A:Q.110

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: V.131, I.132, E.133, G.134, M.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.134, A:M.135 Water bridges: A:D.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colliandre, L. et al., Rationnal Design of small-molecule inhibitors of human Cyclophilins and HCV replication. to be published

Release Date

2014-02-19

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

Related Entries With Identical Sequence