SMTL ID : 4j5b.1

Human Cyclophilin D Complexed with an Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x 6B4: 1-(4-aminobenzyl)-3-(2-{(2R)-2-[2-(methylsulfanyl)phenyl]pyrrolidin-1-yl}-2-oxoethyl)urea(Non-covalent)

6B4.1: 13 residues within 4Å: Chain A: R.54, F.59, M.60, Q.62, G.71, R.81, A.100, N.101, T.106, G.108, Q.110, F.112, H.125 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.59, A:F.112 Hydrogen bonds: A:R.54, A:Q.62, A:R.81, A:N.101, A:N.101, A:N.101 Water bridges: A:R.54, A:Q.110, A:Q.110 pi-Stacking: A:F.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed-Belkacem, A. et al., Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities. Nat Commun (2016)

Release Date

2014-02-19

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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