SMTL ID : 4j8m.1

Aurora A in complex with CD532

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x CJ5: 1-[4-[[4-[(5-cyclopentyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl]amino]phenyl]-3-[3-(trifluoromethyl)phenyl]urea(Non-covalent)

CJ5.1: 28 residues within 4Å: Chain A: L.17, G.18, K.19, G.20, F.22, G.23, N.24, V.25, A.38, K.40, V.41, L.42, L.72, L.88, E.89, Y.90, A.91, P.92, G.94, T.95, L.141, A.151, D.152, V.157, H.158, A.159, P.160 Ligands: PO4.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.17, A:V.25, A:V.25, A:L.42, A:L.72, A:L.88, A:Y.90, A:T.95, A:V.157, A:A.159, A:P.160 Hydrogen bonds: A:E.89, A:A.91, A:A.91, A:D.152, A:D.152 Water bridges: A:T.95

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: K.204, E.208 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: T.95, R.98 Ligands: CJ5.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.95 Water bridges: A:R.98 Salt bridges: A:R.98

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: L.167, C.168, L.171, Y.212, Y.216 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) DMS.5: 4 residues within 4Å: Chain A: W.6, E.30, F.35, Y.75 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:E.30 pi-Cation interactions: A:F.35, A:Y.75

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 12 residues within 4Å: Chain A: T.166, L.167, G.169, L.171, D.172, F.207, E.208, A.209, T.211, Y.212, T.215 Ligands: DMS.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.209, A:A.209 Water bridges: A:D.172, A:Y.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gustafson, W.C. et al., Drugging MYCN through an Allosteric Transition in Aurora Kinase A. Cancer Cell (2014)

Release Date

2014-09-10

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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