SMTL ID : 4jly.1

Dodecameric structure of spermidine N-acetyltransferase from Vibrio cholerae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-12-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.98, K.99, G.100, F.101, A.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.98, A:G.100, A:G.100, A:A.102 SO4.2: 5 residues within 4Å: Chain D: G.98, K.99, G.100, F.101, A.102 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.98, D:G.100, D:A.102 SO4.3: 6 residues within 4Å: Chain E: Q.97, G.98, K.99, G.100, F.101, A.102 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.98, E:K.99, E:G.100, E:F.101, E:A.102 SO4.4: 2 residues within 4Å: Chain F: H.52, D.55 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:D.55 Salt bridges: F:H.52, E:K.51 SO4.5: 6 residues within 4Å: Chain F: Q.97, G.98, K.99, G.100, F.101, A.102 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.98, F:K.99, F:G.100, F:F.101, F:A.102 SO4.6: 5 residues within 4Å: Chain G: G.98, K.99, G.100, F.101, A.102 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:G.98, G:G.100, G:G.100, G:A.102 SO4.7: 5 residues within 4Å: Chain J: G.98, K.99, G.100, F.101, A.102 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:G.98, J:G.100, J:A.102 SO4.8: 6 residues within 4Å: Chain K: Q.97, G.98, K.99, G.100, F.101, A.102 5 PLIP interactions: 5 interactions with chain K Hydrogen bonds: K:G.98, K:K.99, K:G.100, K:F.101, K:A.102 SO4.9: 2 residues within 4Å: Chain L: H.52, D.55 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain K Hydrogen bonds: L:D.55, L:D.55 Salt bridges: L:H.52, K:K.51 SO4.10: 6 residues within 4Å: Chain L: Q.97, G.98, K.99, G.100, F.101, A.102 5 PLIP interactions: 5 interactions with chain L Hydrogen bonds: L:G.98, L:K.99, L:G.100, L:F.101, L:A.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Substrate-Induced Allosteric Change in the Quaternary Structure of the Spermidine N-Acetyltransferase SpeG. J.Mol.Biol. (2015)

Release Date

2013-04-03

Peptides

Spermidine n1-acetyltransferase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

Spermidine n1-acetyltransferase

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