- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x COA: COENZYME A(Non-covalent)
- 9 x SPM: SPERMINE(Non-covalent)
SPM.2: 13 residues within 4Å:- Chain A: N.25, M.31, E.36, E.37, Y.39, E.40, E.44
- Chain G: H.52, I.53, D.55, N.56, E.58, R.59
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain G- Hydrophobic interactions: A:E.36, A:Y.39
- Hydrogen bonds: A:E.44, G:D.55
- Water bridges: A:E.40, A:E.44
SPM.5: 11 residues within 4Å:- Chain B: M.31, W.34, E.36, Y.39, E.40, E.44
- Chain D: H.52, I.53, D.55, E.58, R.59
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:E.40, B:E.44, D:I.53
SPM.7: 12 residues within 4Å:- Chain A: I.53, D.55, E.58, R.59
- Chain C: N.25, M.31, W.34, E.36, E.37, Y.39, E.40, E.44
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:D.55, A:R.59
- Water bridges: C:E.40
SPM.11: 13 residues within 4Å:- Chain E: N.25, M.31, E.36, E.37, Y.39, E.40, E.44
- Chain K: H.52, I.53, D.55, N.56, E.58, R.59
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain K- Hydrophobic interactions: E:E.36, E:Y.39
- Hydrogen bonds: E:E.44, K:D.55
- Water bridges: E:E.40, E:E.44
SPM.14: 11 residues within 4Å:- Chain F: M.31, W.34, E.36, Y.39, E.40, E.44
- Chain H: H.52, I.53, D.55, E.58, R.59
3 PLIP interactions:1 interactions with chain H, 2 interactions with chain F- Hydrogen bonds: H:I.53, F:E.40, F:E.44
SPM.16: 12 residues within 4Å:- Chain E: I.53, D.55, E.58, R.59
- Chain G: N.25, M.31, W.34, E.36, E.37, Y.39, E.40, E.44
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain G- Hydrogen bonds: E:D.55, E:R.59
- Water bridges: G:E.40
SPM.20: 13 residues within 4Å:- Chain C: H.52, I.53, D.55, N.56, E.58, R.59
- Chain I: N.25, M.31, E.36, E.37, Y.39, E.40, E.44
6 PLIP interactions:1 interactions with chain C, 5 interactions with chain I- Hydrogen bonds: C:D.55, I:E.44
- Hydrophobic interactions: I:E.36, I:Y.39
- Water bridges: I:E.40, I:E.44
SPM.23: 11 residues within 4Å:- Chain J: M.31, W.34, E.36, Y.39, E.40, E.44
- Chain L: H.52, I.53, D.55, E.58, R.59
3 PLIP interactions:2 interactions with chain J, 1 interactions with chain L- Hydrogen bonds: J:E.40, J:E.44, L:I.53
SPM.25: 12 residues within 4Å:- Chain I: I.53, D.55, E.58, R.59
- Chain K: N.25, M.31, W.34, E.36, E.37, Y.39, E.40, E.44
3 PLIP interactions:1 interactions with chain K, 2 interactions with chain I- Water bridges: K:E.40
- Hydrogen bonds: I:D.55, I:R.59
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 3 residues within 4Å:- Chain A: N.23, N.26, N.27
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.23
PEG.9: 4 residues within 4Å:- Chain D: N.26, N.27, R.28, N.29
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.29, D:N.29
PEG.12: 3 residues within 4Å:- Chain E: N.23, N.26, N.27
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.23
PEG.18: 4 residues within 4Å:- Chain H: N.26, N.27, R.28, N.29
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:N.29, H:N.29
PEG.21: 3 residues within 4Å:- Chain I: N.23, N.26, N.27
1 PLIP interactions:1 interactions with chain I- Hydrogen bonds: I:N.23
PEG.27: 4 residues within 4Å:- Chain L: N.26, N.27, R.28, N.29
2 PLIP interactions:2 interactions with chain L- Hydrogen bonds: L:N.29, L:N.29
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Filippova, E.V. et al., A Novel Polyamine Allosteric Site of SpeG from Vibrio cholerae Is Revealed by Its Dodecameric Structure. J.Mol.Biol. (2015)
- Release Date
- 2015-03-25
- Peptides
- Spermidine n1-acetyltransferase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
JC
KD
LE
IF
JG
KH
LI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x COA: COENZYME A(Non-covalent)
- 9 x SPM: SPERMINE(Non-covalent)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Filippova, E.V. et al., A Novel Polyamine Allosteric Site of SpeG from Vibrio cholerae Is Revealed by Its Dodecameric Structure. J.Mol.Biol. (2015)
- Release Date
- 2015-03-25
- Peptides
- Spermidine n1-acetyltransferase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
JC
KD
LE
IF
JG
KH
LI
IJ
JK
KL
L