SMTL ID : 4jv8.1

The crystal structure of PDE6D in complex with rac-S1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x 1M1: (6R)-6-(pyridin-2-yl)-5,6-dihydrobenzimidazo[1,2-c]quinazoline(Non-covalent)

1M1.1: 15 residues within 4Å: Chain A: L.19, M.22, L.24, W.34, L.40, A.49, V.51, R.63, Q.80, W.92, I.111, T.133, V.147, L.149 Ligands: 1M1.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.19, A:L.24, A:A.49, A:V.51, A:W.92, A:I.111, A:L.149 Hydrogen bonds: A:R.63, A:Q.80 Water bridges: A:T.133 pi-Stacking: A:W.34 1M1.2: 14 residues within 4Å: Chain A: I.55, L.56, C.58, V.61, V.82, E.90, W.92, I.111, E.112, A.113, M.119, L.149, Y.151 Ligands: 1M1.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.55, A:I.55, A:L.56, A:V.61, A:V.82, A:I.111, A:A.113, A:L.149, A:Y.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimmermann, G. et al., Small molecule inhibition of the KRAS PDEd interaction impairs oncogenic KRAS signalling. Nature (2013)

Release Date

2013-05-22

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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