- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-2-1-mer
- Ligands
- 18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.10: 4 residues within 4Å:- Chain A: V.56, P.57, D.59, C.155
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.56
IPA.11: 6 residues within 4Å:- Chain A: N.170, S.330, S.331, N.332
- Ligands: NAG.5, NAG.9
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.332
IPA.12: 3 residues within 4Å:- Chain A: H.53, A.54, V.56
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.54
IPA.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)IPA.16: 2 residues within 4Å:- Chain A: G.259
- Chain C: R.9
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:R.9
- Hydrogen bonds: C:R.9
- Water bridges: A:G.259
IPA.25: 4 residues within 4Å:- Chain B: V.101, K.316, A.317, M.318
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:M.318
IPA.26: 4 residues within 4Å:- Chain B: V.56, P.57, D.59, C.155
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.56, B:D.59
IPA.27: 4 residues within 4Å:- Chain B: S.330, N.332
- Ligands: NAG.18, NAG.24
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.332
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.13: 3 residues within 4Å:- Chain A: K.305, Q.306, I.307
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.306, A:I.307, A:I.307
- Water bridges: A:K.305
SO4.29: 3 residues within 4Å:- Chain B: K.305, Q.306, I.307
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.306, B:I.307, B:I.307
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Acharya, P. et al., Structural Basis for Highly Effective HIV-1 Neutralization by CD4-Mimetic Miniproteins Revealed by 1.5 A Cocrystal Structure of gp120 and M48U1. Structure (2013)
- Release Date
- 2013-06-12
- Peptides
- HIV-1 YU2 gp120 glycoprotein: AB
CD4-MIMETIC MINIPROTEIN M48U1: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
GC
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-2-1-mer
- Ligands
- 18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Acharya, P. et al., Structural Basis for Highly Effective HIV-1 Neutralization by CD4-Mimetic Miniproteins Revealed by 1.5 A Cocrystal Structure of gp120 and M48U1. Structure (2013)
- Release Date
- 2013-06-12
- Peptides
- HIV-1 YU2 gp120 glycoprotein: AB
CD4-MIMETIC MINIPROTEIN M48U1: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
GC
R