SMTL ID : 4r4n.3 (7 other biounits)

Crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-1 93ug037 gp120

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.56 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 9 residues within 4Å: Chain A: E.95, P.96, L.145, N.146, F.243, C.305, V.306, S.307 Ligands: NAG.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.145 Hydrogen bonds: A:E.95, A:N.146, A:V.306 NAG.2: 5 residues within 4Å: Chain A: K.153, V.154, N.173, E.174, Q.212 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.173, A:E.174, A:Q.212 NAG.3: 3 residues within 4Å: Chain A: N.160, T.162, N.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.160, A:T.162 NAG.4: 5 residues within 4Å: Chain A: R.136, N.146, S.175, N.308 Ligands: NAG.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.136, A:S.175, A:N.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Acharya, P. et al., Structural Definition of an Antibody-Dependent Cellular Cytotoxicity Response Implicated in Reduced Risk for HIV-1 Infection. J.Virol. (2014)

Release Date

2014-11-05

Peptides

HIV-1 gp120: A
M48U1 peptide: B
Antibody 2.2c LIGHT CHAIN: C
Antibody 2.2c heavy CHAIN: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
i

C
K

D
J

HIV-1 gp120

M48U1 peptide

Antibody 2.2c LIGHT CHAIN

Antibody 2.2c heavy CHAIN

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