- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADN: ADENOSINE(Non-covalent)
- 2 x 1PJ: 1-(4-METHOXYPHENYL)CYCLOPROPANECARBOXYLIC ACID(Non-covalent)
1PJ.2: 10 residues within 4Å:- Chain A: I.38, A.62, A.65, E.66, Y.69, P.133, R.136, M.138, Y.152
- Ligands: 1PK.5
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:A.62, A:A.65, A:E.66, A:Y.152, A:Y.152
- Water bridges: A:R.136, A:R.136
- Salt bridges: A:R.136
- pi-Cation interactions: A:R.136
1PJ.11: 11 residues within 4Å:- Chain B: I.38, A.62, A.65, E.66, Y.69, P.133, R.136, M.138, Y.152
- Ligands: 1PK.8, 1PK.9
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:A.62, B:A.65, B:E.66, B:Y.152, B:Y.152
- Water bridges: B:R.136, B:R.136
- Salt bridges: B:R.136
- pi-Cation interactions: B:R.136
- 8 x 1PK: 1H-PERIMIDIN-2-AMINE(Non-covalent)
1PK.3: 5 residues within 4Å:- Chain A: A.105, D.106, Q.107, D.110
- Ligands: 1PK.4
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:A.105
- Hydrogen bonds: A:D.106
- Water bridges: A:D.106
- Salt bridges: A:D.110
1PK.4: 3 residues within 4Å:- Chain A: D.110
- Ligands: 1PK.3, 1PK.8
No protein-ligand interaction detected (PLIP)1PK.5: 4 residues within 4Å:- Chain A: E.66
- Ligands: 1PJ.2, 1PK.6, 1PK.13
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:E.66
1PK.6: 2 residues within 4Å:- Chain A: E.66
- Ligands: 1PK.5
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:E.66
1PK.8: 4 residues within 4Å:- Chain B: E.66
- Ligands: 1PK.4, 1PK.9, 1PJ.11
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.66
1PK.9: 3 residues within 4Å:- Chain B: E.66
- Ligands: 1PK.8, 1PJ.11
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.66
1PK.12: 6 residues within 4Å:- Chain B: A.105, D.106, Q.107, D.110, P.127
- Ligands: 1PK.13
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:A.105, B:P.127
- Hydrogen bonds: B:D.106
- Water bridges: B:Q.107, B:D.110
- Salt bridges: B:D.110
1PK.13: 3 residues within 4Å:- Chain B: D.110
- Ligands: 1PK.5, 1PK.12
No protein-ligand interaction detected (PLIP)- 2 x K: POTASSIUM ION(Non-covalent)
K.7: 5 residues within 4Å:- Chain A: D.294, T.296, V.330, Q.333, G.335
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.294, A:T.296, A:V.330, A:Q.333, A:G.335
K.14: 5 residues within 4Å:- Chain B: D.294, T.296, V.330, Q.333, G.335
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.294, B:T.296, B:V.330, B:Q.333, B:G.335
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with 1-(4-methoxyphenyl)-1-cyclopropane and 2-aminoperimidine. To be Published
- Release Date
- 2013-05-01
- Peptides
- sugar kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADN: ADENOSINE(Non-covalent)
- 2 x 1PJ: 1-(4-METHOXYPHENYL)CYCLOPROPANECARBOXYLIC ACID(Non-covalent)
- 8 x 1PK: 1H-PERIMIDIN-2-AMINE(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with 1-(4-methoxyphenyl)-1-cyclopropane and 2-aminoperimidine. To be Published
- Release Date
- 2013-05-01
- Peptides
- sugar kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B