SMTL ID : 4k8t.1

Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with ethyl 3,4-diaminobenzoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x ADN: ADENOSINE(Non-covalent)

ADN.1: 19 residues within 4Å: Chain A: N.33, I.35, D.37, M.57, G.80, G.81, S.82, N.85, S.137, I.139, M.149, T.151, L.153, E.178, Y.180, T.296, G.297, D.300, P.336 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.33, A:D.37, A:G.81, A:S.82, A:N.85, A:G.297 Water bridges: A:R.147, A:R.147, A:R.147, A:G.297, A:D.300 ADN.5: 19 residues within 4Å: Chain B: N.33, I.35, D.37, M.57, G.80, G.81, S.82, N.85, S.137, I.139, M.149, T.151, L.153, E.178, Y.180, T.296, G.297, D.300, P.336 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.33, B:D.37, B:G.81, B:S.82, B:N.85, B:T.151, B:G.297 Water bridges: B:R.147, B:R.147, B:R.147, B:G.297, B:D.300

1 x E34: ethyl 3,4-diaminobenzoate(Non-covalent)

E34.2: 8 residues within 4Å: Chain A: A.62, A.65, E.66, F.131, P.133, R.136, Y.152 Ligands: DMS.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.65, A:P.133 Hydrogen bonds: A:E.66 Salt bridges: A:R.136

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: I.38, A.65, E.66, Y.69, R.136 Ligands: E34.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.136 Salt bridges: A:E.66 DMS.6: 6 residues within 4Å: Chain B: I.38, A.65, E.66, Y.69, R.136 Ligands: DMS.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.136 Salt bridges: B:E.66 DMS.7: 7 residues within 4Å: Chain B: A.62, A.65, E.66, P.133, R.136, Y.152 Ligands: DMS.6 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:E.66

2 x K: POTASSIUM ION(Non-covalent)

K.4: 5 residues within 4Å: Chain A: D.294, T.296, V.330, Q.333, G.335 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.294, A:T.296, A:V.330, A:Q.333, A:G.335 K.8: 5 residues within 4Å: Chain B: D.294, T.296, V.330, Q.333, G.335 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.294, B:T.296, B:V.330, B:Q.333, B:G.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with ethyl 3,4-diaminobenzoate. To be Published

Release Date

2013-05-01

Peptides

sugar kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

sugar kinase

Related Entries With Identical Sequence