SMTL ID : 4kan.1

Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with 2-(2,5-dimethyl-1,3-thiazol-4-yl)acetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-dimer

Ligands

2 x ADN: ADENOSINE(Non-covalent)

ADN.1: 18 residues within 4Å: Chain A: N.33, I.35, D.37, M.57, G.80, G.81, S.82, N.85, S.137, I.139, M.149, T.151, E.178, Y.180, T.296, G.297, D.300, P.336 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.33, A:D.37, A:G.81, A:S.82, A:N.85, A:T.151, A:G.297 Water bridges: A:R.147, A:R.147, A:R.147, A:G.297, A:D.300 ADN.5: 18 residues within 4Å: Chain B: N.33, I.35, D.37, M.57, G.80, G.81, S.82, N.85, S.137, I.139, M.149, T.151, E.178, Y.180, T.296, G.297, D.300, P.336 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.33, B:D.37, B:G.81, B:S.82, B:N.85, B:T.151, B:G.297 Water bridges: B:R.147, B:R.147, B:R.147, B:G.297, B:D.300

4 x DZY: (2,5-DIMETHYL-1,3-THIAZOL-4-YL)ACETIC ACID(Non-covalent)

DZY.2: 8 residues within 4Å: Chain A: I.38, A.65, E.66, Y.69, R.136, M.138 Chain B: Q.107, I.111 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.38, A:Y.69, A:Y.69, A:R.136, B:I.111 Hydrogen bonds: A:E.66, A:R.136 Salt bridges: A:R.136 pi-Stacking: A:Y.69 pi-Cation interactions: A:R.136 DZY.3: 7 residues within 4Å: Chain A: N.237, T.267, M.268, S.269, A.298, A.327, I.331 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.267, A:A.327, A:I.331 Hydrogen bonds: A:N.237, A:T.267, A:S.269 Water bridges: A:R.238, A:R.238, A:T.267 DZY.6: 8 residues within 4Å: Chain A: Q.107, I.111 Chain B: I.38, A.65, E.66, Y.69, R.136, M.138 9 PLIP interactions: 1 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:I.111, B:I.38, B:Y.69, B:Y.69, B:R.136 Hydrogen bonds: B:R.136 Salt bridges: B:R.136 pi-Stacking: B:Y.69 pi-Cation interactions: B:R.136 DZY.7: 8 residues within 4Å: Chain B: N.237, T.267, M.268, S.269, A.298, F.302, A.327, I.331 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:T.267, B:F.302, B:A.327, B:I.331 Hydrogen bonds: B:N.237, B:T.267, B:S.269 Water bridges: B:R.238, B:T.267

2 x K: POTASSIUM ION(Non-covalent)

K.4: 5 residues within 4Å: Chain A: D.294, T.296, V.330, Q.333, G.335 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.294, A:T.296, A:V.330, A:Q.333, A:G.335 K.8: 5 residues within 4Å: Chain B: D.294, T.296, V.330, Q.333, G.335 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.294, B:T.296, B:V.330, B:Q.333, B:G.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with 2-(2,5-dimethyl-1,3-thiazol-4-yl)acetic acid. To be Published

Release Date

2013-05-22

Peptides

Probable sugar kinase protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable sugar kinase protein

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