- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADN: ADENOSINE(Non-covalent)
- 2 x BZE: 6-phenyl-1,3,5-triazine-2,4-diamine(Non-covalent)
BZE.2: 12 residues within 4Å:- Chain A: I.39, S.40, R.41, G.73, P.74, A.75, L.76, I.334
- Chain B: Q.119, P.338, M.339
- Ligands: DMS.11
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:R.41, A:L.76, A:I.334
- Hydrogen bonds: A:R.41, A:R.41, B:Q.119, B:P.338
- Water bridges: A:G.73
BZE.8: 9 residues within 4Å:- Chain A: Q.119, P.338, M.339
- Chain B: I.39, S.40, R.41, P.74, A.75, L.76
8 PLIP interactions:3 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:Q.119, A:P.338, B:R.41, B:R.41
- Water bridges: A:N.92, B:G.73
- Hydrophobic interactions: B:R.41, B:L.76
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.3: 6 residues within 4Å:- Chain A: I.38, A.65, E.66, Y.69, R.136
- Ligands: DMS.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.136
DMS.4: 5 residues within 4Å:- Chain A: A.62, A.65, R.136, Y.152
- Ligands: DMS.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.136
- Water bridges: A:R.136
- Salt bridges: A:E.66
DMS.5: 7 residues within 4Å:- Chain A: A.78, Q.333, I.334, G.335, P.336, R.337, M.339
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.333, A:R.337
DMS.9: 5 residues within 4Å:- Chain B: A.62, A.65, E.66, R.136
- Ligands: DMS.10
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.66
DMS.10: 6 residues within 4Å:- Chain B: I.38, A.65, E.66, Y.69, R.136
- Ligands: DMS.9
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.136
DMS.11: 7 residues within 4Å:- Chain B: Q.333, I.334, G.335, P.336, R.337, M.339
- Ligands: BZE.2
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.337
- 2 x K: POTASSIUM ION(Non-covalent)
K.6: 5 residues within 4Å:- Chain A: D.294, T.296, V.330, Q.333, G.335
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.294, A:T.296, A:V.330, A:Q.333, A:G.335
K.12: 5 residues within 4Å:- Chain B: D.294, T.296, V.330, Q.333, G.335
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.294, B:T.296, B:V.330, B:Q.333, B:G.335
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with benzoguanamine. To be Published
- Release Date
- 2013-05-22
- Peptides
- Probable sugar kinase protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADN: ADENOSINE(Non-covalent)
- 2 x BZE: 6-phenyl-1,3,5-triazine-2,4-diamine(Non-covalent)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with benzoguanamine. To be Published
- Release Date
- 2013-05-22
- Peptides
- Probable sugar kinase protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B