SMTL ID : 4kgg.3 (2 other biounits)

Crystal structure of light mutant2 and dcr3 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.144, T.146, A.147 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain C: N.144, T.146, A.147 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain E: N.144, T.146, A.147 No protein-ligand interaction detected (PLIP)

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: C.103, P.104, P.105, A.107, S.130, S.132 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.103, A:A.107, A:S.130, A:S.132, H2O.1 MG.4: 6 residues within 4Å: Chain C: C.103, P.104, P.105, A.107, S.130, S.132 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.103, C:A.107, C:S.130, C:S.132, H2O.1 MG.6: 6 residues within 4Å: Chain E: C.103, P.104, P.105, A.107, S.130, S.132 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:C.103, E:A.107, E:S.130, E:S.132, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Mechanistic basis for functional promiscuity in the TNF and TNF receptor superfamilies: structure of the LIGHT:DcR3 assembly. Structure (2014)

Release Date

2013-08-07

Peptides

Tumor necrosis factor receptor superfamily member 6B: ACE
Tumor necrosis factor ligand superfamily member 14: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
D

E
D

B
B

D
B

F
B

Tumor necrosis factor receptor superfamily member 6B

Tumor necrosis factor ligand superfamily member 14

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