SMTL ID : 4j6g.3 (2 other biounits)

CRYSTAL STRUCTURE OF LIGHT AND DcR3 COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-3-3-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain C: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain E: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain B: N.144, T.146, A.147 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain D: N.144, T.146, A.147 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain F: N.144, T.146, A.147 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:T.146

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain B: C.103, P.104, P.105, A.107, S.130, S.132 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.103, B:A.107, B:S.130, B:S.132, H2O.1 MG.6: 6 residues within 4Å: Chain D: C.103, P.104, P.105, A.107, S.130, S.132 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.103, D:A.107, D:S.130, D:S.132, H2O.2 MG.9: 6 residues within 4Å: Chain F: C.103, P.104, P.105, A.107, S.130, S.132 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:C.103, F:A.107, F:S.130, F:S.132, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Mechanistic basis for functional promiscuity in the TNF and TNF receptor superfamilies: structure of the LIGHT:DcR3 assembly. Structure (2014)

Release Date

2013-03-13

Peptides

Tumor necrosis factor ligand superfamily member 14: ACE
Tumor necrosis factor receptor superfamily member 6B: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

E
B

B
D

D
D

F
D

Tumor necrosis factor ligand superfamily member 14

Tumor necrosis factor receptor superfamily member 6B

Related Entries With Identical Sequence