SMTL ID : 4kov.2 (1 other biounit)

Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with Cefuroxime

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.91, L.92, G.93, V.94, A.95, R.96, L.129 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.91, A:G.93, A:G.93, A:V.94, A:A.95, A:R.96 Water bridges: A:L.92, A:L.92 Salt bridges: A:R.96 SO4.2: 3 residues within 4Å: Chain A: R.143, H.144 Ligands: KOV.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.144 Salt bridges: A:H.144 SO4.3: 3 residues within 4Å: Chain A: R.52, G.53, Y.110 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.53, A:Y.110 Water bridges: A:R.52, A:S.54, A:S.54, A:S.54, A:S.54 SO4.13: 7 residues within 4Å: Chain B: G.91, L.92, G.93, V.94, A.95, R.96, L.129 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.91, B:G.93, B:G.93, B:V.94, B:A.95, B:R.96 Water bridges: B:L.92, B:L.92 Salt bridges: B:R.96 SO4.14: 3 residues within 4Å: Chain B: R.143, H.144 Ligands: KOV.16 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.144 Salt bridges: B:H.144 SO4.15: 3 residues within 4Å: Chain B: R.52, G.53, Y.110 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.53, B:Y.110 Water bridges: B:R.52, B:S.54, B:S.54, B:S.54, B:S.54

2 x KOV: (6R,7R)-3-[(carbamoyloxy)methyl]-7-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid(Non-covalent)

KOV.4: 16 residues within 4Å: Chain A: Y.30, C.31, Y.32, P.33, R.51, Y.70, G.81, N.82, M.83, I.117, S.118, F.120, Y.130, R.143, L.153 Ligands: SO4.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.33, A:P.33, A:F.120, A:R.143, A:R.143 Hydrogen bonds: A:R.51, A:N.82, A:N.82, A:M.83, A:Y.130, A:Y.130, A:R.143 Water bridges: A:S.118 Salt bridges: A:R.51 KOV.16: 16 residues within 4Å: Chain B: Y.30, C.31, Y.32, P.33, R.51, Y.70, G.81, N.82, M.83, I.117, S.118, F.120, Y.130, R.143, L.153 Ligands: SO4.14 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:P.33, B:P.33, B:F.120, B:R.143, B:R.143 Hydrogen bonds: B:R.51, B:N.82, B:N.82, B:M.83, B:Y.130, B:Y.130, B:R.143 Water bridges: B:S.118 Salt bridges: B:R.51

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: A.10, E.11, T.12, L.15 Ligands: EDO.6 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: E.11, T.12 Ligands: EDO.5 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: R.25, D.26, F.29, D.145, P.146 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: A.141, R.143, Q.155 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: E.27, C.31, M.83, M.84, V.85, R.90 Ligands: EDO.10 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: E.27, Y.30, N.123 Ligands: EDO.9 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: D.76, R.113, L.114 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: E.16, A.19, G.20 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain B: A.10, E.11, T.12, L.15 Ligands: EDO.18 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain B: E.11, T.12 Ligands: EDO.17 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain B: R.25, D.26, F.29, D.145, P.146 Ligand excluded by PLIP EDO.20: 3 residues within 4Å: Chain B: A.141, R.143, Q.155 Ligand excluded by PLIP EDO.21: 7 residues within 4Å: Chain B: E.27, C.31, M.83, M.84, V.85, R.90 Ligands: EDO.22 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain B: E.27, Y.30, N.123 Ligands: EDO.21 Ligand excluded by PLIP EDO.23: 3 residues within 4Å: Chain B: D.76, R.113, L.114 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain B: E.16, A.19, G.20 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Majorek, K.A. et al., Structural, Functional, and Inhibition Studies of a Gcn5-related N-Acetyltransferase (GNAT) Superfamily Protein PA4794: A NEW C-TERMINAL LYSINE PROTEIN ACETYLTRANSFERASE FROM PSEUDOMONAS AERUGINOSA. J.Biol.Chem. (2013)

Release Date

2013-06-05

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein

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