SMTL ID : 4ku1.1

Role of the hinge and C-gamma-2/C-gamma-3 interface in immunoglobin G1 Fc domain motions: implications for Fc engineering

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- GAL- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL-FUL.1: 15 residues within 4Å: Chain A: F.5, F.7, P.8, P.9, K.10, E.22, T.24, V.28, D.29, Q.59, N.61, T.63, R.65 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.2, NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.7, A:K.10, A:E.22, A:E.22, A:T.24, A:T.24, A:K.10 Water bridges: A:K.10, A:D.13

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.2: 16 residues within 4Å: Chain B: F.5, F.7, P.8, P.9, K.10, E.22, T.24, V.26, V.28, D.29, Q.59, N.61, T.63, R.65, K.98 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL-FUL.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.59, B:N.61, B:K.10, B:E.22, B:E.22, B:T.24, B:T.24, B:K.98 Water bridges: B:Y.60, B:K.10, B:D.13 Hydrophobic interactions: B:F.5

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: K.104, R.108, Y.137, D.165, G.166, S.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.165 Water bridges: A:Q.106, A:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, M. et al., Immunoglobulin g1 fc domain motions: implications for fc engineering. J.Mol.Biol. (2014)

Release Date

2014-02-19

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region

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