SMTL ID : 4kvo.2 (3 other biounits)

The NatA (Naa10p/Naa15p) amino-terminal acetyltrasferase complex bound to AcCoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-1-1-mer

Ligands

16 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.221, L.225 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: K.92, Y.94 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: D.528, D.529, F.531, D.532 Chain B: K.29 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.116, D.117 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: F.535 Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.146, S.150, A.190 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: R.422, K.453, K.456, Y.457 Ligands: CL.10 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: K.425, K.456, R.460 Ligands: CL.10 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Ligands: CL.8, CL.9 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: K.335 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain A: H.439 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: R.460, K.501 Ligand excluded by PLIP CL.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain A: R.448, W.494 Chain B: L.19 Ligand excluded by PLIP

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.15: 17 residues within 4Å: Chain B: N.21, L.22, S.75, V.76, S.77, V.78, R.83, H.84, L.85, G.86, L.87, A.88, H.111, V.112, N.116, Y.123, T.126 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.22, B:V.78, B:A.88 Hydrogen bonds: B:V.76, B:V.76, B:V.78, B:R.83, B:H.84, B:H.84, B:G.86, B:A.88, B:N.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liszczak, G. et al., Molecular basis for N-terminal acetylation by the heterodimeric NatA complex. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-07-31

Peptides

N-terminal acetyltransferase A complex subunit nat1: A
N-terminal acetyltransferase A complex catalytic subunit ard1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

N-terminal acetyltransferase A complex subunit nat1

N-terminal acetyltransferase A complex catalytic subunit ard1

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