SMTL ID : 4kvo.3 (3 other biounits)

The NatA (Naa10p/Naa15p) amino-terminal acetyltrasferase complex bound to AcCoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-1-1-mer

Ligands

17 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.89, D.117, L.120, F.531 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: S.113, R.116, D.117 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: L.131, R.135, A.151, A.155, F.538 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: F.535, F.538, R.539 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.146, S.150, A.190 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: G.160, Y.162, A.163, K.201 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: R.221, R.251 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain A: R.422, K.425, K.453, K.456, Y.457 Ligands: CL.10 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: K.425, K.456, R.460 Ligands: CL.10 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: R.422 Ligands: CL.8, CL.9 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: M.496, R.515, T.518 Ligand excluded by PLIP CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: R.422, H.426 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain A: K.668 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain A: G.308, F.311, K.342, V.346 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain B: K.29 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain A: R.448 Chain B: L.19 Ligand excluded by PLIP

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.16: 24 residues within 4Å: Chain B: N.21, L.22, I.73, T.74, S.75, V.76, S.77, V.78, R.83, H.84, L.85, G.86, L.87, A.88, K.89, H.111, V.112, N.116, R.117, A.118, H.121, L.122, Y.123, T.126 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.22, B:V.78, B:A.88 Hydrogen bonds: B:V.76, B:V.76, B:V.78, B:R.83, B:H.84, B:L.85, B:G.86, B:G.86, B:L.87, B:A.88, B:K.89, B:N.116, B:H.121

1 x NA: SODIUM ION(Non-functional Binders)

NA.17: 3 residues within 4Å: Chain B: I.120, R.124, D.125 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.124, B:D.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liszczak, G. et al., Molecular basis for N-terminal acetylation by the heterodimeric NatA complex. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-07-31

Peptides

N-terminal acetyltransferase A complex subunit nat1: A
N-terminal acetyltransferase A complex catalytic subunit ard1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

N-terminal acetyltransferase A complex subunit nat1

N-terminal acetyltransferase A complex catalytic subunit ard1

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